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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Y-family DNA polymerase Dpo4 bypassing N2-naphthyl-guanine adduct in anti orientation

Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012w8l_P_DG1_DG2miBBB10360.38BB10
022w8l_P_DG2_DG3B12BB04690.31BB04
032w8l_P_DG3_DG4BBBBB00770.34BB00
042w8l_P_DG4_DG5B12BB04490.32BB04
052w8l_P_DG5_DA6B12BB04730.16BB04
062w8l_P_DA6_DA7BBBBB00790.18BB00
072w8l_P_DA7_DG8BBBBB00370.36BB00
082w8l_P_DG8_DG9B12BB04770.24BB04
092w8l_P_DG9_DA10BBBBB00630.18BB00
102w8l_P_DA10_DT11BBBBB00900.22BB00
112w8l_P_DT11_DT12BBBBB00870.15BB00
122w8l_P_DT12_DC13BBBBB00390.43BB00
132w8l_T_DA.A3_DC.A4NANNANT01.02OP20
142w8l_T_DA.B3_DC.B4NANNANT01.15IC05
152w8l_T_DG6_DA7BBBBB00490.25BB00
162w8l_T_DA7_DA8BB2BB07240.29BB07
172w8l_T_DA8_DT9BBBBB00880.21BB00
182w8l_T_DT9_DC10BBBBB00690.20BB00
192w8l_T_DC10_DC11B12BB04430.32BB04
202w8l_T_DC11_DT12BBBBB00870.14BB00
212w8l_T_DT12_DT13BBBBB00610.28BB00
222w8l_T_DT13_DC14BBBBB00830.25BB00
232w8l_T_DC14_DC15BBBBB00840.29BB00
242w8l_T_DC15_DC16B12BB04850.20BB04
252w8l_T_DC16_DC17BBBBB00710.31BB00
262w8l_T_DC17_DC18BBBBB00690.28BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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