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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Selectivity of F8-actinomycin D for RNA:DNA hybrids and its anti-leukemia activity

Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
01316d_A_DG1_DA2NANNANT01.22AB04
02316d_A_DA2_DA3BB1BB03510.41BB03
03316d_A_DA3_DG4NANNANT00.84BB17
04316d_A_DG4_DC5NANNANT00.40AA12
05316d_A_DC5_DT6NANNANT00.68BB03
06316d_A_DT6_DT7BBBBB00510.34BB00
07316d_A_DT7_DC8miBBB12470.36BB12
08316d_B_DG9_DA10NANNANT00.66AB02
09316d_B_DA10_DA11NANNANT00.81AB02
10316d_B_DA11_DG12B-ABA09310.47BA09
11316d_B_DG12_DC13NANNANT00.87IC03
12316d_B_DC13_DT14NANNANT00.66BA13
13316d_B_DT14_DT15NANNANT01.31ZZ01
14316d_B_DT15_DC16B-ABA05210.62BA05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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