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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION

Results of the assignment of 85 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
01352d_A_DT1_DG2NANNANT01.02OP18
02352d_A_DG2_DG3BBBBB00640.23BB00
03352d_A_DG3_DG4BBBBB01800.14BB01
04352d_A_DG4_DG5BBBBB01720.14BB01
05352d_A_DG5_DT6BBBBB01190.29BB01
06352d_B_DT11_DG.A12NANNANT00.90OP21
07352d_B_DT11_DG.B12NANNANT00.92OP21
08352d_B_DG.A12_DG.A13BBBBB00570.24BB00
09352d_B_DG.B12_DG.B13BBBBB00550.26BB00
10352d_B_DG.A13_DG14BBBBB00790.26BB00
11352d_B_DG.B13_DG14BBBBB00670.29BB00
12352d_B_DG14_DG15B12BB04770.20BB04
13352d_C_DG22_DG23BBBBB00710.21BB00
14352d_C_DG23_DG24BBBBB01630.19BB01
15352d_C_DG24_DG25BBBBB00570.36BB00
16352d_C_DG25_DT26NANNANT01.73OP17
17352d_D_DT31_DG32NANNANT00.88OP21
18352d_D_DG32_DG33BBBBB00610.24BB00
19352d_D_DG33_DG34BBBBB00780.13BB00
20352d_D_DG34_DG35BBBBB00830.18BB00
21352d_D_DG35_DT36NANNANT00.79IC04
22352d_E_DT41_DG42NANNANT01.97OP19
23352d_E_DG42_DG43A-BAB05560.28AB05
24352d_E_DG43_DG44BBBBB00700.13BB00
25352d_E_DG44_DG45BBBBB00750.17BB00
26352d_F_DT51_DG52NANNANT02.10OP19
27352d_F_DG52_DG53A-BAB05640.28AB05
28352d_F_DG53_DG54BBBBB01780.14BB01
29352d_F_DG54_DG55BBBBB00750.17BB00
30352d_F_DG55_DT56NANNANT00.76IC04
31352d_G_DG.A62_DG63A-BAB04740.19AB04
32352d_G_DG.B62_DG63A-BAB04720.25AB04
33352d_G_DG63_DG64BBBBB00780.17BB00
34352d_G_DG64_DG65BBBBB00870.16BB00
35352d_G_DG65_DT66BBBBB00530.30BB00
36352d_H_DT.A71_DG.A72NANNANT01.10OP16
37352d_H_DT.B71_DG.B72NANNANT02.00OP17
38352d_H_DG.A72_DG73A-BAB04840.18AB04
39352d_H_DG.B72_DG73A-BAB04840.29AB04
40352d_H_DG73_DG74BBBBB00800.16BB00
41352d_H_DG74_DG75BBBBB00670.26BB00
42352d_I_DT81_DG82NANNANT01.92OP19
43352d_I_DG82_DG83A-BAB05590.31AB05
44352d_I_DG83_DG84BBBBB00780.15BB00
45352d_I_DG84_DG85BBBBB00860.15BB00
46352d_I_DG85_DT86BBBBB00560.31BB00
47352d_J_DT.A91_DG.A92NANNANT01.96OP17
48352d_J_DT.B91_DG.B92NANNANT00.96OP16
49352d_J_DG.A92_DG93A-BAB05550.30AB05
50352d_J_DG.B92_DG93A-BAB04780.21AB04
51352d_J_DG93_DG94BBBBB00820.13BB00
52352d_J_DG94_DG95BBBBB00880.15BB00
53352d_J_DG95_DT96OPNOP20730.45OP20
54352d_K_DG102_DG.A103A-BAB04810.15AB04
55352d_K_DG102_DG.B103A-BAB04810.22AB04
56352d_K_DG.A103_DG.A104BBBBB00820.14BB00
57352d_K_DG.B103_DG.B104NANNANT00.63BB16
58352d_K_DG.A104_DG105BBBBB00830.13BB00
59352d_K_DG.B104_DG105BBBBB00830.13BB00
60352d_L_DG112_DG.A113A-BAB05690.25AB05
61352d_L_DG112_DG.B113A-BAB05670.29AB05
62352d_L_DG.A113_DG.A114BBBBB00520.14BB00
63352d_L_DG.B113_DG.B114BBBBB00640.19BB00
64352d_L_DG.A114_DG115BBBBB00750.16BB00
65352d_L_DG.B114_DG115BBBBB00880.17BB00
66352d_L_DG115_DT116NANNANT00.90IC04
67352d_M_DT121_DG122NANNANT00.88OP21
68352d_M_DG122_DG123BBBBB00540.29BB00
69352d_M_DG123_DG124BBBBB01910.17BB01
70352d_M_DG124_DG125BBBBB00600.17BB00
71352d_M_DG125_DT126NANNANT00.79IC04
72352d_N_DG132_DG133BBBBB00600.26BB00
73352d_N_DG133_DG134BBBBB01730.17BB01
74352d_N_DG134_DG135BBBBB00760.14BB00
75352d_N_DG135_DT136BBBBB01210.24BB01
76352d_O_DG142_DG143BBBBB00570.26BB00
77352d_O_DG143_DG144BBBBB00800.16BB00
78352d_O_DG144_DG145BBBBB00800.20BB00
79352d_P_DT151_DG152NANNANT00.73OP13
80352d_P_DG152_DG153BBBBB00660.23BB00
81352d_P_DG153_DG154BBBBB01750.17BB01
82352d_P_DG154_DG.A155BBBBB00480.31BB00
83352d_P_DG154_DG.B155BBBBB00480.32BB00
84352d_P_DG.A155_DT.A156NANNANT01.18OP13
85352d_P_DG.B155_DT.B156NANNANT01.21OP13

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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