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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

RESTRICTION ENDONUCLEASE BAMHI COMPLEX WITH DNA AND MANGANESE IONS (POST-REACTIVE COMPLEX)

Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013bam_C_DT1_DA2NANNANT01.13OP20
023bam_C_DA2_DT3BBBBB00250.45BB00
033bam_C_DT3_DG4B12BB04630.19BB04
043bam_C_DG4_DG5miBBB12650.34BB12
053bam_C_DG5_DA6BBwBB16440.26BB16
063bam_C_DA6_DT7miBBB15650.18BB15
073bam_C_DT7_DC8BBBBB00580.26BB00
083bam_C_DC8_DC9BBBBB00350.43BB00
093bam_C_DC9_DA10BBBBB00730.20BB00
103bam_C_DA10_DT11BBBBB00600.17BB00
113bam_C_DT11_DA12NANNANT01.01BB1S
123bam_D_DT1_DA2NANNANT00.73BB16
133bam_D_DA2_DT3BBBBB00440.29BB00
143bam_D_DT3_DG4B12BB04410.19BB04
153bam_E_DG1_DA2miBBB15500.37BB15
163bam_E_DA2_DT3BBwBB02610.32BB02
173bam_E_DT3_DC4BBwBB03660.23BB03
183bam_E_DC4_DC5BBBBB00200.48BB00
193bam_E_DC5_DA6BBBBB00750.21BB00
203bam_E_DA6_DT7BBwBB02550.26BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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