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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
RESTRICTION ENDONUCLEASE BAMHI COMPLEX WITH DNA AND MANGANESE IONS (POST-REACTIVE COMPLEX)

Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013bam_C_DT1_DA2NANNANT01.10OP20
023bam_C_DA2_DT3BBBBB00260.42BB00
033bam_C_DT3_DG4B12BB04640.21BB04
043bam_C_DG4_DG5miBBB12650.34BB12
053bam_C_DG5_DA6BB1BB16480.27BB16
063bam_C_DA6_DT7miBBB15710.18BB15
073bam_C_DT7_DC8BBBBB00580.25BB00
083bam_C_DC8_DC9BBBBB00370.36BB00
093bam_C_DC9_DA10BBBBB00740.16BB00
103bam_C_DA10_DT11BBBBB00600.20BB00
113bam_C_DT11_DA12NANNANT01.01BB1S
123bam_D_DT1_DA2NANNANT00.82BB16
133bam_D_DA2_DT3BBBBB00440.26BB00
143bam_D_DT3_DG4B12BB04420.23BB04
153bam_E_DG1_DA2miBBB15550.37BB15
163bam_E_DA2_DT3BB1BB02650.32BB02
173bam_E_DT3_DC4BB1BB03650.23BB03
183bam_E_DC4_DC5BBBBB00220.43BB00
193bam_E_DC5_DA6BBBBB00750.17BB00
203bam_E_DA6_DT7BB1BB02540.26BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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