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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Structure of E. coli 5-Methyluridine Methyltransferase TrmA in complex with 19 nucleotide T-arm analogue

Results of the assignment of 32 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013bt7_C_G48_C49NANNANT00.46AA03
023bt7_C_C49_U50AAAAA00520.21AA00
033bt7_C_U50_G51AAAAA00870.13AA00
043bt7_C_G51_U52AAAAA00750.16AA00
053bt7_C_U52_G53A-BAB05860.18AB05
063bt7_C_U55_C56AAAAA04510.54AA04
073bt7_C_C56_G57NANNANT00.62AA08
083bt7_C_G57_A58NANNANT00.61AB02
093bt7_C_A58_U59NANNANT01.01OP13
103bt7_C_U59_C60NANNANT00.99OP20
113bt7_C_C60_C61NANNANT01.14AB1S
123bt7_C_C61_A62SYNAAS1730.46AAS1
133bt7_C_A62_C63AAAAA04850.28AA04
143bt7_C_C63_A64AAAAA00840.12AA00
153bt7_C_A64_G65AAAAA08820.17AA08
163bt7_C_G65_C66AAAAA03480.38AA03
173bt7_D_G48_C49NANNANT00.33AA03
183bt7_D_C49_U50AAAAA00400.20AA00
193bt7_D_U50_G51AAAAA08470.35AA08
203bt7_D_G51_U52AAAAA00600.19AA00
213bt7_D_U52_G53A-BAB05720.20AB05
223bt7_D_U55_C56AA1AA10400.51AA10
233bt7_D_C56_G57AAAAA0890.63AA08
243bt7_D_G57_A58AAAAA00240.40AA00
253bt7_D_A58_U59NANNANT01.71OP17
263bt7_D_U59_C60NANNANT00.63IC06
273bt7_D_C60_C61NANNANT00.47OP12
283bt7_D_C61_A62AAAAA00900.15AA00
293bt7_D_A62_C63AAAAA00880.13AA00
303bt7_D_C63_A64AAAAA08690.32AA08
313bt7_D_A64_G65AAAAA00450.26AA00
323bt7_D_G65_C66AAAAA04820.23AA04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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