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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Cre-loxP Synaptic structure

Results of the assignment of 133 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
0013c29_C_DT1_DA2NANNANT00.49BB04
0023c29_C_DA2_DT3BBBBB00720.28BB00
0033c29_C_DT3_DA4B12BB04590.26BB04
0043c29_C_DA4_DA5BBBBB00500.45BB00
0053c29_C_DA5_DC6B-ABA09830.16BA09
0063c29_C_DC6_DT7A-BAB05520.27AB05
0073c29_C_DT7_DT8BBBBB00740.18BB00
0083c29_C_DT8_DC9BBBBB00610.31BB00
0093c29_C_DC9_DG10B-ABA08720.19BA08
0103c29_C_DG10_DT11A-BAB03710.26AB03
0113c29_C_DT11_DA12BBBBB01810.13BB01
0123c29_C_DA12_DT13BBBBB00670.23BB00
0133c29_C_DT13_DA14B12BB04710.26BB04
0143c29_C_DA14_1AP15BBBBB00520.21BB00
0153c29_C_1AP15_DT16NANNANT00.73AB02
0163c29_C_DT16_DG17BBBBB00540.32BB00
0173c29_C_DG17_DT18BBBBB00540.22BB00
0183c29_C_DT18_DA19BBBBB01900.14BB01
0193c29_C_DA19_DT20BBBBB01670.27BB01
0203c29_C_DT20_DG21BBBBB00600.25BB00
0213c29_C_DG21_DC22NANNANT00.67BB12
0223c29_C_DC22_DT23BB1BB16700.48BB16
0233c29_C_DT23_DA24B-ABA08830.27BA08
0243c29_C_DA24_DT25A-BAB01710.24AB01
0253c29_C_DT25_DA26BBBBB00220.41BB00
0263c29_C_DA26_DC27BBBBB00750.33BB00
0273c29_C_DC27_DG28BB2BB07830.19BB07
0283c29_C_DG28_DA29BBBBB00860.18BB00
0293c29_C_DA29_DA30B12BB04750.21BB04
0303c29_C_DA30_DG31BBBBB00860.12BB00
0313c29_C_DG31_DT32BBBBB00720.23BB00
0323c29_C_DT32_DT33B12BB04360.44BB04
0333c29_C_DT33_DA34B-ABA17730.35BA17
0343c29_C_DA34_DT35NANNANT00.85AB02
0353c29_D_DA2_DT3miBBB15240.34BB15
0363c29_D_DT3_DA4BB2BB07770.16BB07
0373c29_D_DA4_DA5BBBBB00480.45BB00
0383c29_D_DA5_DC6B-ABA09800.17BA09
0393c29_D_DC6_DT7A-BAB05640.26AB05
0403c29_D_DT7_DT8BBBBB00820.16BB00
0413c29_D_DT8_DC9B-ABA05970.14BA05
0423c29_D_DC9_DG10A-BAB03930.28AB03
0433c29_D_DG10_DT11BBBBB00770.31BB00
0443c29_D_DT11_DA12B12BB04640.23BB04
0453c29_D_DA12_DT13BBBBB00940.22BB00
0463c29_D_DT13_DA14B12BB04720.23BB04
0473c29_D_DA14_DG15BBBBB00870.17BB00
0483c29_D_DG15_DC16NANNANT00.56BA09
0493c29_D_DC16_DA17AAAAA00850.23AA00
0503c29_D_DA17_DT18NANNANT00.47AB04
0513c29_D_DT18_DA19BBBBB00130.29BB00
0523c29_D_DA19_DC20B-ABA05860.24BA05
0533c29_D_DC20_DA21BBBBB00150.41BB00
0543c29_D_DA21_DT22B-ABA09880.25BA09
0553c29_D_DT22_DT23A-BAB01220.57AB01
0563c29_D_DT23_DA24NANNANT00.39BA08
0573c29_D_DA24_DT25A-BAB05260.29AB05
0583c29_D_DT25_DA26BBBBB00160.50BB00
0593c29_D_DA26_DC27BBBBB00750.35BB00
0603c29_D_DC27_DG28BB2BB07580.19BB07
0613c29_D_DG28_DA29BBBBB00920.22BB00
0623c29_D_DA29_DA30B12BB04800.21BB04
0633c29_D_DA30_DG31B12BB04800.22BB04
0643c29_D_DG31_DT32BBBBB00340.26BB00
0653c29_D_DT32_DT33BBBBB00580.19BB00
0663c29_D_DT33_DA34B12BB04720.20BB04
0673c29_D_DA34_DT35miBBB12880.19BB12
0683c29_E_DA2_DT3BBBBB00100.36BB00
0693c29_E_DT3_DA4BBBBB00330.50BB00
0703c29_E_DA4_DA5BBBBB00400.46BB00
0713c29_E_DA5_DC6B-ABA09850.19BA09
0723c29_E_DC6_DT7A-BAB05490.28AB05
0733c29_E_DT7_DT8BBBBB01900.12BB01
0743c29_E_DT8_DC9BBBBB01580.23BB01
0753c29_E_DC9_DG10BBBBB01310.38BB01
0763c29_E_DG10_DT11NANNANT00.39BB01
0773c29_E_DT11_DA12BBBBB00880.14BB00
0783c29_E_DA12_DT13BBBBB00740.21BB00
0793c29_E_DT13_DA14B12BB04720.28BB04
0803c29_E_DA14_1AP15BBBBB00480.23BB00
0813c29_E_1AP15_DT16NANNANT00.72AB02
0823c29_E_DT16_DG17BBBBB00640.31BB00
0833c29_E_DG17_DT18BBBBB00370.22BB00
0843c29_E_DT18_DA19BBBBB01880.17BB01
0853c29_E_DA19_DT20BBBBB00670.30BB00
0863c29_E_DT20_DG21BBBBB00560.24BB00
0873c29_E_DG21_DC22NANNANT00.71BA08
0883c29_E_DC22_DT23BB1BB16530.50BB16
0893c29_E_DT23_DA24B-ABA08770.29BA08
0903c29_E_DA24_DT25A-BAB01680.25AB01
0913c29_E_DT25_DA26BBBBB00290.41BB00
0923c29_E_DA26_DC27BBBBB00770.34BB00
0933c29_E_DC27_DG28BB2BB07860.18BB07
0943c29_E_DG28_DA29BBBBB00500.22BB00
0953c29_E_DA29_DA30B12BB04790.17BB04
0963c29_E_DA30_DG31BBBBB01870.14BB01
0973c29_E_DG31_DT32BBBBB00550.31BB00
0983c29_E_DT32_DT33BBBBB00130.23BB00
0993c29_E_DT33_DA34miBBB10740.27BB10
1003c29_E_DA34_DT35B12BB05680.27BB05
1013c29_F_DA2_DT3NANNANT00.50BB00
1023c29_F_DT3_DA4BB2BB07810.17BB07
1033c29_F_DA4_DA5BBBBB00480.48BB00
1043c29_F_DA5_DC6B-ABA09670.18BA09
1053c29_F_DC6_DT7A-BAB05570.27AB05
1063c29_F_DT7_DT8BBBBB01890.12BB01
1073c29_F_DT8_DC9BBBBB01540.20BB01
1083c29_F_DC9_DG10BBBBB00320.33BB00
1093c29_F_DG10_DT11BBBBB00750.30BB00
1103c29_F_DT11_DA12BBBBB00890.19BB00
1113c29_F_DA12_DT13BBBBB00930.24BB00
1123c29_F_DT13_DA14B12BB04670.23BB04
1133c29_F_DA14_DG15BBBBB01720.17BB01
1143c29_F_DG15_DC16NANNANT00.60BA09
1153c29_F_DC16_DA17AAAAA00660.26AA00
1163c29_F_DA17_DT18NANNANT00.45AB04
1173c29_F_DT18_DA19BBBBB00130.31BB00
1183c29_F_DA19_DC20B-ABA05880.22BA05
1193c29_F_DC20_DA21A-BAB03430.30AB03
1203c29_F_DA21_DT22B-ABA09870.29BA09
1213c29_F_DT22_DT23A-BAB05300.42AB05
1223c29_F_DT23_DA24B-ABA08530.38BA08
1233c29_F_DA24_DT25A-BAB05540.27AB05
1243c29_F_DT25_DA26BBBBB00100.46BB00
1253c29_F_DA26_DC27BBBBB00770.35BB00
1263c29_F_DC27_DG28BB2BB07840.16BB07
1273c29_F_DG28_DA29BBBBB00880.24BB00
1283c29_F_DA29_DA30B12BB04760.19BB04
1293c29_F_DA30_DG31BBBBB00640.25BB00
1303c29_F_DG31_DT32BBBBB00430.27BB00
1313c29_F_DT32_DT33BBBBB00540.24BB00
1323c29_F_DT33_DA34B12BB04690.20BB04
1333c29_F_DA34_DT35miBBB12900.12BB12

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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Color by NtC (balls)

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IC

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Z

N