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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

The Crystal Structure of Methyl-CpG Binding Domain of Human MeCP2 in Complex with a Methylated DNA Sequence from BDNF

Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013c2i_B_DT1_DC2NANNANT00.61BB16
023c2i_B_DC2_DT3NANNANT00.39BB02
033c2i_B_DT3_DG4NANNANT00.38BB15
043c2i_B_DG4_DG5B12BB04600.23BB04
053c2i_B_DG5_DA6B12BB04120.30BB04
063c2i_B_DA6_DA7BBBBB00830.24BB00
073c2i_B_DA7_5CM8BBBBB00750.23BB00
083c2i_B_5CM8_DG9BBBBB00610.32BB00
093c2i_B_DG9_DG10BBBBB00300.25BB00
103c2i_B_DG10_DA11BB2BB07970.23BB07
113c2i_B_DA11_DA12BBBBB00480.16BB00
123c2i_B_DA12_DT13BBBBB01800.26BB01
133c2i_B_DT13_DT14BBBBB00470.24BB00
143c2i_B_DT14_DC15BBBBB00680.29BB00
153c2i_B_DC15_DT16BBBBB00320.19BB00
163c2i_B_DT16_DT17BB2BB07230.45BB07
173c2i_B_DT17_DC18miBBB10560.31BB10
183c2i_B_DC18_DT19miBBB10300.69BB10
193c2i_B_DT19_DA20BBBBB00660.26BB00
203c2i_C_DA21_DT22BBBBB00750.27BB00
213c2i_C_DT22_DA23NANNANT00.44BB07
223c2i_C_DA23_DG24NANNANT00.56BB17
233c2i_C_DG24_DA25NANNANT00.43BB07
243c2i_C_DA25_DA26miBBB10300.37BB10
253c2i_C_DA26_DG27BBBBB00570.31BB00
263c2i_C_DG27_DA28BBBBB00670.30BB00
273c2i_C_DA28_DA29BBBBB00780.21BB00
283c2i_C_DA29_DT30BBBBB00780.30BB00
293c2i_C_DT30_DT31BBBBB00890.19BB00
303c2i_C_DT31_DC32BBBBB00510.35BB00
313c2i_C_DC32_5CM33BB2BB07720.18BB07
323c2i_C_5CM33_DG34B12BB04800.22BB04
333c2i_C_DG34_DT35BBBBB00910.13BB00
343c2i_C_DT35_DT36BBBBB00860.17BB00
353c2i_C_DT36_DC37BBBBB00760.18BB00
363c2i_C_DC37_DC38B12BB04280.32BB04
373c2i_C_DC38_DA39miBBB15250.41BB15
383c2i_C_DA39_DG40NANNANT00.46BB14

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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