Click the Summary/Torsions/Similar/... tabs for more details.
Center view on step or molecule.
Show reference and contacts model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of the guide-strand-containing Argonaute protein silencing complex

Results of the assignment of 23 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013dlh_X_DT1_DG2NANNANT00.93OP21
023dlh_X_DG2_DA3BBBBB00200.29BB00
033dlh_X_DA3_DG4BBBBB01640.45BB01
043dlh_X_DG4_DG5A-BAB03370.60AB03
053dlh_X_DG5_DT6BBBBB00360.58BB00
063dlh_X_DT6_DA7NANNANT00.41BA05
073dlh_X_DA7_DG8NANNANT00.47AB03
083dlh_X_DG8_DT9NANNANT00.62BB00
093dlh_X_DT9_DA10BBBBB00120.57BB00
103dlh_X_DA10_DG11NANNANT01.97OP23
113dlh_X_DT18_DA19NANNANT01.10OP24
123dlh_X_DA19_DG20BBwBB16470.57BB16
133dlh_X_DG20_DT21BBBBB01780.20BB01
143dlh_Y_DT101_DG102NANNANT01.13OP21
153dlh_Y_DG102_DA103B-ABA08440.34BA08
163dlh_Y_DA103_DG104BBBBB01410.60BB01
173dlh_Y_DG104_DG105A-BAB03710.48AB03
183dlh_Y_DG105_DT106BBBBB00570.47BB00
193dlh_Y_DT106_DA107NANNANT00.61BB15
203dlh_Y_DA107_DG108NANNANT00.59BB00
213dlh_Y_DG108_DT109NANNANT00.30BB17
223dlh_Y_DA119_DG120NANNANT01.15BB16
233dlh_Y_DG120_DT121BBBBB00200.36BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N