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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of the guide-strand-containing Argonaute protein silencing complex

Results of the assignment of 23 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013dlh_X_DT1_DG2NANNANT00.96OP21
023dlh_X_DG2_DA3BBBBB00210.30BB00
033dlh_X_DA3_DG4BBBBB01670.45BB01
043dlh_X_DG4_DG5A-BAB03500.60AB03
053dlh_X_DG5_DT6BBBBB00370.55BB00
063dlh_X_DT6_DA7NANNANT00.56BA05
073dlh_X_DA7_DG8NANNANT00.47AB03
083dlh_X_DG8_DT9NANNANT00.77AB03
093dlh_X_DT9_DA10BBBBB00130.53BB00
103dlh_X_DA10_DG11NANNANT01.55OP19
113dlh_X_DT18_DA19NANNANT01.15BB08
123dlh_X_DA19_DG20BB1BB16430.55BB16
133dlh_X_DG20_DT21BBBBB01780.20BB01
143dlh_Y_DT101_DG102NANNANT01.16OP21
153dlh_Y_DG102_DA103B-ABA08550.34BA08
163dlh_Y_DA103_DG104BBBBB01440.60BB01
173dlh_Y_DG104_DG105A-BAB03750.48AB03
183dlh_Y_DG105_DT106BBBBB00580.45BB00
193dlh_Y_DT106_DA107NANNANT00.61BB15
203dlh_Y_DA107_DG108NANNANT00.63BB00
213dlh_Y_DG108_DT109NANNANT00.34BB17
223dlh_Y_DA119_DG120NANNANT01.10BB16
233dlh_Y_DG120_DT121BBBBB00210.37BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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