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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC3-loop deletion complex

Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013go8_B_DG2_DG3BB2BB07820.26BB07
023go8_B_DG3_DT4B-ABA05920.15BA05
033go8_B_DT4_DA5A-BAB03670.37AB03
043go8_B_DA5_DG6BBBBB01820.17BB01
053go8_B_DG6_DA7BBBBB00800.18BB00
063go8_B_DA7_DT8B-ABA05870.14BA05
073go8_B_DT8_DC9AAAAA02930.34AA02
083go8_B_DC9_DC10AAAAA02150.50AA02
093go8_B_DC10_DG11A-BAB01760.16AB01
103go8_B_DG11_DG12B12BB04770.31BB04
113go8_B_DG12_DA13BBBBB00880.12BB00
123go8_B_DA13_DC14BBBBB00840.20BB00
133go8_B_DC14_DG15B12BB04280.36BB04
143go8_C_DG2_DC3BB2BB07300.36BB07
153go8_C_DC3_DG4B12BB04830.19BB04
163go8_C_DG4_DT5BBBBB00730.27BB00
173go8_C_DT5_DC6BBBBB01880.18BB01
183go8_C_DC6_DC7BBBBB00670.35BB00
193go8_C_DC7_8OG8B-ABA08260.43BA08
203go8_C_8OG8_DG9A-BAB01340.32AB01
213go8_C_DG9_DA10BBBBB00770.23BB00
223go8_C_DA10_DT11miBBB10540.38BB10
233go8_C_DT11_DC12BBBBB01480.32BB01
243go8_C_DC12_DT13BBBBB00750.24BB00
253go8_C_DT13_DA14BBBBB00880.16BB00
263go8_C_DA14_DC15B-ABA08520.25BA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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