Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
| step number | Step name | CANA | NtC | confal | rmsd | |
|---|---|---|---|---|---|---|
| 01 | 3hp6_B_DC21_DG22 | BB2 | BB07 | 33 | 0.39 | BB07 |
| 02 | 3hp6_B_DG22_DA23 | BBB | BB00 | 62 | 0.28 | BB00 |
| 03 | 3hp6_B_DA23_DT24 | BBB | BB00 | 69 | 0.17 | BB00 |
| 04 | 3hp6_B_DT24_DC25 | B-A | BA05 | 16 | 0.24 | BA05 |
| 05 | 3hp6_B_DC25_DA26 | BBB | BB01 | 61 | 0.28 | BB01 |
| 06 | 3hp6_B_DA26_DC27 | B-A | BA01 | 13 | 0.37 | BA01 |
| 07 | 3hp6_B_DC27_DG28 | AAA | AA00 | 89 | 0.20 | AA00 |
| 08 | 3hp6_C_DA1_DC2 | BB1 | BB16 | 21 | 0.63 | BB16 |
| 09 | 3hp6_C_DC2_DG3 | NAN | NANT | 0 | 1.53 | OP16 |
| 10 | 3hp6_C_DG3_DC4 | AAA | AA00 | 55 | 0.26 | AA00 |
| 11 | 3hp6_C_DC4_DC5 | AAA | AA00 | 60 | 0.17 | AA00 |
| 12 | 3hp6_C_DC5_DG6 | AA1 | AA01 | 93 | 0.14 | AA01 |
| 13 | 3hp6_C_DG6_DT7 | A-B | AB04 | 86 | 0.16 | AB04 |
| 14 | 3hp6_C_DT7_DG8 | BBB | BB00 | 81 | 0.14 | BB00 |
| 15 | 3hp6_C_DG8_DA9 | BBB | BB00 | 96 | 0.13 | BB00 |
| 16 | 3hp6_C_DA9_DT10 | B-A | BA01 | 78 | 0.22 | BA01 |
| 17 | 3hp6_C_DT10_DC11 | AAA | AA02 | 46 | 0.50 | AA02 |
| 18 | 3hp6_C_DC11_DG12 | A-B | AB01 | 14 | 0.35 | AB01 |
| 19 | 3hp6_E_DC21_DG22 | NAN | NANT | 0 | 0.39 | AB03 |
| 20 | 3hp6_E_DG22_DA23 | BBB | BB00 | 74 | 0.17 | BB00 |
| 21 | 3hp6_E_DA23_DT24 | BBB | BB00 | 85 | 0.22 | BB00 |
| 22 | 3hp6_E_DT24_DC25 | B-A | BA01 | 33 | 0.24 | BA01 |
| 23 | 3hp6_E_DC25_DA26 | AAA | AA00 | 25 | 0.28 | AA00 |
| 24 | 3hp6_E_DA26_DC27 | AAA | AA00 | 40 | 0.21 | AA00 |
| 25 | 3hp6_E_DC27_DG28 | AAA | AA00 | 75 | 0.20 | AA00 |
| 26 | 3hp6_F_DA1_DC2 | BBB | BB00 | 36 | 0.36 | BB00 |
| 27 | 3hp6_F_DC2_DG3 | NAN | NANT | 0 | 1.55 | OP16 |
| 28 | 3hp6_F_DG3_DC4 | AAA | AA00 | 53 | 0.24 | AA00 |
| 29 | 3hp6_F_DC4_DC5 | AAA | AA00 | 67 | 0.17 | AA00 |
| 30 | 3hp6_F_DC5_DG6 | AA1 | AA01 | 95 | 0.14 | AA01 |
| 31 | 3hp6_F_DG6_DT7 | A-B | AB04 | 88 | 0.16 | AB04 |
| 32 | 3hp6_F_DT7_DG8 | BBB | BB00 | 52 | 0.18 | BB00 |
| 33 | 3hp6_F_DG8_DA9 | BBB | BB00 | 73 | 0.17 | BB00 |
| 34 | 3hp6_F_DA9_DT10 | B-A | BA05 | 89 | 0.18 | BA05 |
| 35 | 3hp6_F_DT10_DC11 | BBB | BB01 | 36 | 0.28 | BB01 |
| 36 | 3hp6_F_DC11_DG12 | BBB | BB00 | 23 | 0.45 | BB00 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ | ε | ζ | α1 | β1 | γ1 | δ1 | χ | χ1 | NCCN | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results (as csv)Restraints (default edits file)
Best NtC fitted to input structure.
Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers
Download the papers:
description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|