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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus F710Y mutant bound to G:T mismatch

Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013hp6_B_DC21_DG22BB2BB07330.39BB07
023hp6_B_DG22_DA23BBBBB00620.28BB00
033hp6_B_DA23_DT24BBBBB00690.17BB00
043hp6_B_DT24_DC25B-ABA05160.24BA05
053hp6_B_DC25_DA26BBBBB01610.28BB01
063hp6_B_DA26_DC27B-ABA01130.37BA01
073hp6_B_DC27_DG28AAAAA00890.20AA00
083hp6_C_DA1_DC2BB1BB16210.63BB16
093hp6_C_DC2_DG3NANNANT01.53OP16
103hp6_C_DG3_DC4AAAAA00550.26AA00
113hp6_C_DC4_DC5AAAAA00600.17AA00
123hp6_C_DC5_DG6AA1AA01930.14AA01
133hp6_C_DG6_DT7A-BAB04860.16AB04
143hp6_C_DT7_DG8BBBBB00810.14BB00
153hp6_C_DG8_DA9BBBBB00960.13BB00
163hp6_C_DA9_DT10B-ABA01780.22BA01
173hp6_C_DT10_DC11AAAAA02460.50AA02
183hp6_C_DC11_DG12A-BAB01140.35AB01
193hp6_E_DC21_DG22NANNANT00.39AB03
203hp6_E_DG22_DA23BBBBB00740.17BB00
213hp6_E_DA23_DT24BBBBB00850.22BB00
223hp6_E_DT24_DC25B-ABA01330.24BA01
233hp6_E_DC25_DA26AAAAA00250.28AA00
243hp6_E_DA26_DC27AAAAA00400.21AA00
253hp6_E_DC27_DG28AAAAA00750.20AA00
263hp6_F_DA1_DC2BBBBB00360.36BB00
273hp6_F_DC2_DG3NANNANT01.55OP16
283hp6_F_DG3_DC4AAAAA00530.24AA00
293hp6_F_DC4_DC5AAAAA00670.17AA00
303hp6_F_DC5_DG6AA1AA01950.14AA01
313hp6_F_DG6_DT7A-BAB04880.16AB04
323hp6_F_DT7_DG8BBBBB00520.18BB00
333hp6_F_DG8_DA9BBBBB00730.17BB00
343hp6_F_DA9_DT10B-ABA05890.18BA05
353hp6_F_DT10_DC11BBBBB01360.28BB01
363hp6_F_DC11_DG12BBBBB00230.45BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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