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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus F710Y mutant bound to G:T mismatch

Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013hp6_B_DC21_DG22BB2BB07330.28BB07
023hp6_B_DG22_DA23BBBBB00630.32BB00
033hp6_B_DA23_DT24BBBBB00690.17BB00
043hp6_B_DT24_DC25B-ABA05160.23BA05
053hp6_B_DC25_DA26BBBBB01600.28BB01
063hp6_B_DA26_DC27B-ABA01130.34BA01
073hp6_B_DC27_DG28AAAAA00880.19AA00
083hp6_C_DA1_DC2BBwBB16240.68BB16
093hp6_C_DC2_DG3NANNANT01.45OP31
103hp6_C_DG3_DC4AAAAA00540.26AA00
113hp6_C_DC4_DC5AAAAA00600.24AA00
123hp6_C_DC5_DG6AAwAA01920.14AA01
133hp6_C_DG6_DT7A-BAB04870.16AB04
143hp6_C_DT7_DG8BBBBB00800.18BB00
153hp6_C_DG8_DA9BBBBB00960.15BB00
163hp6_C_DA9_DT10B-ABA01780.30BA01
173hp6_C_DT10_DC11AAAAA02460.50AA02
183hp6_C_DC11_DG12A-BAB01140.33AB01
193hp6_E_DC21_DG22NANNANT00.39AB03
203hp6_E_DG22_DA23BBBBB00720.20BB00
213hp6_E_DA23_DT24BBBBB00850.18BB00
223hp6_E_DT24_DC25B-ABA01330.28BA01
233hp6_E_DC25_DA26AAAAA00230.31AA00
243hp6_E_DA26_DC27AAAAA00380.23AA00
253hp6_E_DC27_DG28AAAAA00750.19AA00
263hp6_F_DA1_DC2BBBBB00340.28BB00
273hp6_F_DC2_DG3NANNANT01.44OP31
283hp6_F_DG3_DC4AAAAA00510.26AA00
293hp6_F_DC4_DC5AAAAA00670.25AA00
303hp6_F_DC5_DG6AAwAA01950.14AA01
313hp6_F_DG6_DT7A-BAB04890.16AB04
323hp6_F_DT7_DG8BBBBB00500.27BB00
333hp6_F_DG8_DA9BBBBB00730.15BB00
343hp6_F_DA9_DT10B-ABA05880.14BA05
353hp6_F_DT10_DC11BBBBB01340.28BB01
363hp6_F_DC11_DG12BBBBB00230.43BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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