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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of restriction endonuclease EcoRII N-terminal effector-binding domain in complex with cognate DNA

Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013hqf_B_DG-4_DC-3B-ABA05660.21BA05
023hqf_B_DC-3_DC-2NANNANT00.35BB01
033hqf_B_DC-2_DC-1NANNANT00.33BB01
043hqf_B_DC-1_DT0B-ABA01390.26BA01
053hqf_B_DT0_DG1A-BAB01720.21AB01
063hqf_B_DG1_DG2BBBBB00820.20BB00
073hqf_B_DG2_DC3miBBB15800.23BB15
083hqf_B_DC3_DG4BBBBB00840.25BB00
093hqf_C_DC-4_DG-3NANNANT00.39BB03
103hqf_C_DG-3_DC-2BBBBB00810.29BB00
113hqf_C_DC-2_DC-1BBBBB00690.22BB00
123hqf_C_DC-1_DA0NANNANT00.50BB13
133hqf_C_DA0_DG1BB1BB16240.36BB16
143hqf_C_DG1_DG2BB2BB07800.25BB07
153hqf_C_DG2_DG3BBBBB01520.18BB01
163hqf_C_DG3_DC4B-ABA05800.16BA05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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