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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of a Z-Z junction

Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013irq_G_DC1_DG2ZZZZZ1S850.11ZZ1S
023irq_G_DG2_DC3ZZZZZS1680.17ZZS1
033irq_G_DC3_DG4ZZZZZ1S270.16ZZ1S
043irq_G_DG4_DC5ZZZZZS1270.33ZZS1
053irq_G_DC5_DG6NANNANT00.36ZZ1S
063irq_G_DG6_DT.A7NANNANT00.78AA03
073irq_G_DG6_DT.B7NANNANT00.72BBS1
083irq_G_DT.A7_DC8NANNANT01.26AA04
093irq_G_DT.B7_DC8NANNANT01.07BA08
103irq_G_DC8_DG9NANNANT00.59ZZ2S
113irq_G_DG9_DC10ZZZZZS1360.38ZZS1
123irq_G_DC10_DG11ZZZZZ1S90.17ZZ1S
133irq_G_DG11_DC12ZZZZZS2320.18ZZS2
143irq_G_DC12_DG13ZZZZZ2S680.25ZZ2S
153irq_F_DC1_DG2NANNANT02.03AA01
163irq_F_DG2_DC3ZZZZZS1240.22ZZS1
173irq_F_DC3_DG4NANNANT00.20ZZ1S
183irq_F_DG4_DC5NANNANT00.29ZZS1
193irq_F_DC5_DG6ZZZZZ2S470.21ZZ2S
203irq_F_DG6_DA7NANNANT00.76AA10
213irq_F_DA7_DC8NANNANT00.54ZZS1
223irq_F_DC8_DG9ZZZZZ1S340.17ZZ1S
233irq_F_DG9_DC10ZZZZZS1860.16ZZS1
243irq_F_DC10_DG11NANNANT00.31ZZ1S
253irq_F_DG11_DC12ZZZZZS1540.19ZZS1
263irq_F_DC12_DG13ZZZZZ2S660.17ZZ2S

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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