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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese at 2.55 resolution

Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013oy9_C_DA1_DT2NANNANT01.31AB02
023oy9_C_DT2_DT3BB1BB16380.70BB16
033oy9_C_DT3_DG4NANNANT00.57OP17
043oy9_C_DG4_DT5BBBBB01560.26BB01
053oy9_C_DT5_DC6BBBBB00250.26BB00
063oy9_C_DC6_DA7BB2BB07600.29BB07
073oy9_C_DA7_DT8B-ABA05660.29BA05
083oy9_C_DT8_DG9A-BAB01490.28AB01
093oy9_C_DG9_DG10BB2BB08810.24BB08
103oy9_C_DG10_DA11BBBBB00860.18BB00
113oy9_C_DA11_DA12BBBBB00950.18BB00
123oy9_C_DA12_DT13BBBBB01680.19BB01
133oy9_C_DT13_DT14BBBBB01400.23BB01
143oy9_C_DT14_DT15BBBBB00820.18BB00
153oy9_C_DT15_DC16BBBBB00930.17BB00
163oy9_C_DC16_DG17BBBBB00680.24BB00
173oy9_C_DG17_DC18B-ABA05520.17BA05
183oy9_C_DC18_DA19NANNANT00.56AA01
193oy9_D_DT1_DG2NANNANT00.72BB14
203oy9_D_DG2_DC3BBBBB00510.25BB00
213oy9_D_DC3_DG4BBBBB00400.32BB00
223oy9_D_DG4_DA5BBBBB00180.21BB00
233oy9_D_DA5_DA6B12BB04110.27BB04
243oy9_D_DA6_DA7BBBBB01740.18BB01
253oy9_D_DA7_DT8BBBBB01930.18BB01
263oy9_D_DT8_DT9BBBBB00750.21BB00
273oy9_D_DT9_DC10BBBBB00930.18BB00
283oy9_D_DC10_DC11BBBBB00770.42BB00
293oy9_D_DC11_DA12BB2BB07820.16BB07
303oy9_D_DA12_DT13BBBBB00430.30BB00
313oy9_D_DT13_DG14BBBBB00670.31BB00
323oy9_D_DG14_DA15BBBBB00640.39BB00
333oy9_D_DA15_DC16B-ABA08770.24BA08
343oy9_D_DC16_DA17NANNANT00.89BB12

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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