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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and raltegravir at 2.65 resolution

Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013oya_C_DA1_DT2NANNANT01.69ZZS2
023oya_C_DT2_DT3BB1BB16410.68BB16
033oya_C_DT3_DG4NANNANT00.54OP17
043oya_C_DG4_DT5BBBBB01560.25BB01
053oya_C_DT5_DC6BBBBB00140.28BB00
063oya_C_DC6_DA7BB2BB07590.27BB07
073oya_C_DA7_DT8B-ABA05730.30BA05
083oya_C_DT8_DG9A-BAB03760.37AB03
093oya_C_DG9_DG10BB2BB08790.27BB08
103oya_C_DG10_DA11BBBBB00370.23BB00
113oya_C_DA11_DA12BBBBB00910.20BB00
123oya_C_DA12_DT13BBBBB01510.21BB01
133oya_C_DT13_DT14BBBBB01390.23BB01
143oya_C_DT14_DT15BBBBB00760.17BB00
153oya_C_DT15_DC16BBBBB00920.21BB00
163oya_C_DC16_DG17BBBBB00440.31BB00
173oya_C_DG17_DC18B-ABA05660.17BA05
183oya_C_DC18_DA19A-BAB01520.40AB01
193oya_D_DT1_DG2NANNANT00.61BB14
203oya_D_DG2_DC3BBBBB00170.37BB00
213oya_D_DC3_DG4BBBBB00170.38BB00
223oya_D_DG4_DA5BBBBB00330.19BB00
233oya_D_DA5_DA6B12BB04210.19BB04
243oya_D_DA6_DA7BBBBB00770.14BB00
253oya_D_DA7_DT8BBBBB01930.20BB01
263oya_D_DT8_DT9BBBBB00690.21BB00
273oya_D_DT9_DC10BBBBB00880.17BB00
283oya_D_DC10_DC11BBBBB00760.40BB00
293oya_D_DC11_DA12BB2BB07810.17BB07
303oya_D_DA12_DT13BBBBB00510.32BB00
313oya_D_DT13_DG14BBBBB00710.32BB00
323oya_D_DG14_DA15B12BB04750.25BB04
333oya_D_DA15_DC16B-ABA08600.28BA08
343oya_D_DC16_DA.A17NANNANT01.48OP17

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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