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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
ternary crystal structure of polymerase lambda variant with a GT mispair at the primer terminus with Mn2+ in the active site

Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013pmn_B_DC1_DG2BBBBB00760.45BB00
023pmn_B_DG2_DG3B12BB04600.31BB04
033pmn_B_DG3_DC4BBBBB01750.28BB01
043pmn_B_DC4_DC5NANNANT01.21OP21
053pmn_B_DC5_DT6B-ABA05810.21BA05
063pmn_B_DT6_DT7BBBBB01600.31BB01
073pmn_B_DT7_DA8BBBBB00220.18BB00
083pmn_B_DA8_DC9B12BB04130.26BB04
093pmn_B_DC9_DT10BBBBB00410.28BB00
103pmn_B_DT10_DG11BBBBB00710.35BB00
113pmn_C_DC1_DA2A-BAB05360.26AB05
123pmn_C_DA2_DG3BBBBB01900.17BB01
133pmn_C_DG3_DT4B-ABA05790.16BA05
143pmn_C_DT4_DA5B-ABA05550.21BA05
153pmn_C_DA5_DG6AAAAA00310.39AA00
163pmn_D_DG1_DC2A-BAB04630.25AB04
173pmn_D_DC2_DC3BBBBB01820.17BB01
183pmn_D_DC3_DG4BBBBB00660.37BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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