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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of human DNMT1(646-1600) in complex with DNA

Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013pta_B_DT1_DC2miBBB13420.29BB13
023pta_B_DC2_DC3NANNANT00.53BB02
033pta_B_DC3_DC4NANNANT00.52BB13
043pta_B_DC4_DG5BBBBB00340.66BB00
053pta_B_DG5_DT6NANNANT00.62BB02
063pta_B_DT6_DG7NANNANT00.41BB13
073pta_B_DG7_DA8BBBBB00450.47BB00
083pta_B_DA8_DG9BBBBB00610.25BB00
093pta_B_DG9_DC10B12BB04670.23BB04
103pta_B_DC10_DC11BBBBB00500.33BB00
113pta_B_DC11_DT12BBBBB00670.20BB00
123pta_B_DT12_DC13miBBB13800.17BB13
133pta_B_DC13_DC14NANNANT00.74IC06
143pta_B_DC14_DG15BB2BB08150.56BB08
153pta_B_DG15_DC16BB1BB02690.36BB02
163pta_B_DC16_DA17miBBB12270.55BB12
173pta_B_DA17_DG18NANNANT00.68BB17
183pta_B_DG18_DG19NANNANT00.91BB07
193pta_C_DC20_DC21NANNANT00.96BB12
203pta_C_DC21_DT22NANNANT00.92BB17
213pta_C_DT22_DG23NANNANT00.74BB00
223pta_C_DG23_DC24BBBBB00590.26BB00
233pta_C_DC24_DG25BBBBB00730.29BB00
243pta_C_DG25_DG26BBBBB00470.43BB00
253pta_C_DG26_DA27B12BB04440.38BB04
263pta_C_DA27_DG28NANNANT00.49BB08
273pta_C_DG28_DG29BBBBB00300.32BB00
283pta_C_DG29_DC30NANNANT00.70BB07
293pta_C_DC30_DT31BBBBB00400.37BB00
303pta_C_DT31_DC32BBBBB00700.23BB00
313pta_C_DC32_DA33BBBBB00550.34BB00
323pta_C_DA33_DC34miBBB13710.31BB13
333pta_C_DC34_DG35BBBBB00360.46BB00
343pta_C_DG35_DG36miBBB13840.33BB13
353pta_C_DG36_DG37BBBBB00100.50BB00
363pta_C_DG37_DA38miBBB13790.33BB13

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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