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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Structural Basis of Selective Binding of Nonmethylated CpG Islands by the CXXC Domain of CFP1

Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013qmc_B_DG1_DC2miBBB15470.27BB15
023qmc_B_DC2_DC3miBBB15160.32BB15
033qmc_B_DC3_DA4B12BB04100.30BB04
043qmc_B_DA4_DC5miBBB12870.25BB12
053qmc_B_DC5_DC6BB1BB16860.21BB16
063qmc_B_DC6_DG7B12BB04690.20BB04
073qmc_B_DG7_DC8B-ABA05660.26BA05
083qmc_B_DC8_DT9A-BAB03880.34AB03
093qmc_B_DT9_DG10BB2BB07790.19BB07
103qmc_B_DG10_DG11BBBBB00510.30BB00
113qmc_B_DG11_DC12B-ABA01660.23BA01
123qmc_C_DG1_DC2BBBBB00680.21BB00
133qmc_C_DC2_DC3BBBBB00710.27BB00
143qmc_C_DC3_DA4BB2BB07880.17BB07
153qmc_C_DA4_DG5BBBBB00530.42BB00
163qmc_C_DG5_DC6BB2BB07160.37BB07
173qmc_C_DC6_DG7BBBBB00400.27BB00
183qmc_C_DG7_DG8BBBBB00880.16BB00
193qmc_C_DG8_DT9BBBBB00800.17BB00
203qmc_C_DT9_DG10BB2BB07420.21BB07
213qmc_C_DG10_DG11BBBBB00490.35BB00
223qmc_C_DG11_DC12B-ABA08740.33BA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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