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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Structural Basis of Selective Binding of Nonmethylated CpG Islands by the CXXC Domain of CFP1

Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013qmc_B_DG1_DC2miBBB15350.27BB15
023qmc_B_DC2_DC3NANNANT00.32BB15
033qmc_B_DC3_DA4B12BB04100.35BB04
043qmc_B_DA4_DC5miBBB12860.25BB12
053qmc_B_DC5_DC6BBwBB16890.32BB16
063qmc_B_DC6_DG7B12BB04690.18BB04
073qmc_B_DG7_DC8B-ABA05660.34BA05
083qmc_B_DC8_DT9BBBBB00210.35BB00
093qmc_B_DT9_DG10BB2BB07790.27BB07
103qmc_B_DG10_DG11BBBBB00500.24BB00
113qmc_B_DG11_DC12B-ABA01660.20BA01
123qmc_C_DG1_DC2BBBBB00650.25BB00
133qmc_C_DC2_DC3BBBBB00700.19BB00
143qmc_C_DC3_DA4BB2BB07880.26BB07
153qmc_C_DA4_DG5BBBBB00530.34BB00
163qmc_C_DG5_DC6BB2BB07160.34BB07
173qmc_C_DC6_DG7BBBBB00410.28BB00
183qmc_C_DG7_DG8BBBBB00870.20BB00
193qmc_C_DG8_DT9BBBBB00790.17BB00
203qmc_C_DT9_DG10BB2BB07420.23BB07
213qmc_C_DG10_DG11BBBBB00480.27BB00
223qmc_C_DG11_DC12B-ABA08670.33BA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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