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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
The first crystal structure of a human telomeric G-quadruplex DNA bound to a metal-containing ligand (a nickel complex)

Results of the assignment of 10 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013qsf_X_DA1001_DG1002NANNANT01.13ZZS2
023qsf_X_DG1002_DG1003AAAAA00230.31AA00
033qsf_X_DG1003_DG1004A-BAB01170.25AB01
043qsf_X_DG1004_DT1005NANNANT00.65OP21
053qsf_X_DT1005_DT1006NANNANT00.58OP10
063qsf_X_DT1006_DA1007NANNANT00.35OP21
073qsf_X_DA1007_DG1008NANNANT00.71OP10
083qsf_X_DG1008_DG1009BBBBB00670.24BB00
093qsf_X_DG1009_DG1010BBBBB00420.30BB00
103qsf_X_DG1010_DT1011NANNANT00.83BB2S

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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