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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal Structure Analysis of TRF2-Dbd-DNA complex

Results of the assignment of 31 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013sjm_C_DC3_DT4BBBBB00620.29BB00
023sjm_C_DT4_DA5BBBBB00710.27BB00
033sjm_C_DA5_DG6BBBBB00680.35BB00
043sjm_C_DG6_DG7BB2BB07810.21BB07
053sjm_C_DG7_DG8BBBBB00850.11BB00
063sjm_C_DG8_DT9BBBBB00680.14BB00
073sjm_C_DT9_DT10BBBBB00700.23BB00
083sjm_C_DT10_DA11BBBBB00340.40BB00
093sjm_C_DA11_DG12BBBBB00400.47BB00
103sjm_C_DG12_DG13BB2BB07690.25BB07
113sjm_C_DG13_DG14B-ABA05700.24BA05
123sjm_C_DG14_DT15BBBBB01500.25BB01
133sjm_C_DT15_DT16BBBBB01770.17BB01
143sjm_C_DT16_DA17BBBBB00600.28BB00
153sjm_C_DA17_DG18BBBBB01500.28BB01
163sjm_D_DC2_DT3BB1BB16660.49BB16
173sjm_D_DT3_DA4BB2BB07830.15BB07
183sjm_D_DA4_DA5BBBBB00770.24BB00
193sjm_D_DA5_DC6BBBBB01670.21BB01
203sjm_D_DC6_DC7BBBBB00610.28BB00
213sjm_D_DC7_DC8BBBBB00710.21BB00
223sjm_D_DC8_DT9BBBBB00740.36BB00
233sjm_D_DT9_DA10BB2BB07770.23BB07
243sjm_D_DA10_DA11BBBBB00910.20BB00
253sjm_D_DA11_DC12B-ABA05860.13BA05
263sjm_D_DC12_DC13BBBBB00350.29BB00
273sjm_D_DC13_DC14BBBBB00730.18BB00
283sjm_D_DC14_DT15BBBBB00850.31BB00
293sjm_D_DT15_DA16BB2BB07870.15BB07
303sjm_D_DA16_DG17BBBBB00670.34BB00
313sjm_D_DG17_DA18B12BB04360.20BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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