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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal Structure Analysis of TRF2-Dbd-DNA complex

Results of the assignment of 31 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013sjm_C_DC3_DT4BBBBB00610.27BB00
023sjm_C_DT4_DA5BBBBB00700.31BB00
033sjm_C_DA5_DG6BBBBB00670.30BB00
043sjm_C_DG6_DG7BB2BB07810.18BB07
053sjm_C_DG7_DG8BBBBB00840.18BB00
063sjm_C_DG8_DT9BBBBB00680.21BB00
073sjm_C_DT9_DT10BBBBB00700.24BB00
083sjm_C_DT10_DA11BBBBB00270.44BB00
093sjm_C_DA11_DG12BBBBB00400.42BB00
103sjm_C_DG12_DG13BB2BB07690.25BB07
113sjm_C_DG13_DG14B-ABA05700.21BA05
123sjm_C_DG14_DT15BBBBB01490.25BB01
133sjm_C_DT15_DT16BBBBB01760.17BB01
143sjm_C_DT16_DA17BBBBB00600.24BB00
153sjm_C_DA17_DG18BBBBB01490.28BB01
163sjm_D_DC2_DT3BBwBB16690.56BB16
173sjm_D_DT3_DA4BB2BB07830.28BB07
183sjm_D_DA4_DA5BBBBB00770.18BB00
193sjm_D_DA5_DC6BBBBB01670.21BB01
203sjm_D_DC6_DC7BBBBB00610.34BB00
213sjm_D_DC7_DC8BBBBB00700.24BB00
223sjm_D_DC8_DT9BBBBB00730.30BB00
233sjm_D_DT9_DA10BB2BB07770.34BB07
243sjm_D_DA10_DA11BBBBB00900.13BB00
253sjm_D_DA11_DC12B-ABA05860.21BA05
263sjm_D_DC12_DC13BBBBB00360.35BB00
273sjm_D_DC13_DC14BBBBB00720.20BB00
283sjm_D_DC14_DT15BBBBB00850.24BB00
293sjm_D_DT15_DA16BB2BB07870.29BB07
303sjm_D_DA16_DG17BBBBB00670.25BB00
313sjm_D_DG17_DA18B12BB04350.18BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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