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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Ternary complex of HNE Adduct modified DNA (5'-CXG-3' vs 13-mer) with Dpo4 and incoming dDGT

Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013t5h_B_DC402_DA403NANNANT00.94BB02
023t5h_B_DA403_DC404NANNANT00.70OP10
033t5h_B_DG406_DA407BBBBB00910.25BB00
043t5h_B_DA407_DA408B12BB04750.25BB04
053t5h_B_DA408_DT409BBBBB00920.21BB00
063t5h_B_DT409_DC410B12BB04610.31BB04
073t5h_B_DC410_DC411BBBBB00730.22BB00
083t5h_B_DC411_DT412BB1BB02840.23BB02
093t5h_B_DT412_DT413BBBBB00720.34BB00
103t5h_B_DT413_DC414miBBB13610.33BB13
113t5h_B_DC414_DC415BB1BB16570.29BB16
123t5h_B_DC415_DC416BBBBB00750.22BB00
133t5h_B_DC416_DC417BBBBB00860.29BB00
143t5h_B_DC417_DC418BB1BB11860.24BB11
153t5h_C_DG501_DG502BBBBB00910.29BB00
163t5h_C_DG502_DG503B12BB04780.22BB04
173t5h_C_DG503_DG504BB1BB02390.35BB02
183t5h_C_DG504_DG505BB1BB02670.28BB02
193t5h_C_DG505_DA506BBBBB00790.20BB00
203t5h_C_DA506_DA507BB1BB02810.25BB02
213t5h_C_DA507_DG508BBBBB00510.32BB00
223t5h_C_DG508_DG509BBBBB00710.26BB00
233t5h_C_DG509_DA510BBBBB00820.17BB00
243t5h_C_DA510_DT511BBBBB00640.31BB00
253t5h_C_DT511_DT512BBBBB00590.25BB00
263t5h_C_DT512_DC513BBBBB00760.24BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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