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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of fluoride riboswitch, soaked in Mn2+

Results of the assignment of 51 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013vrs_A_G1_G2NANNANT01.44OP16
023vrs_A_G2_G3AAAAA00700.17AA00
033vrs_A_G3_C4AAAAA08870.23AA08
043vrs_A_C4_G5AAAAA00750.26AA00
053vrs_A_G5_A6NANNANT01.19OP05
063vrs_A_A6_U7NANNANT00.56IC02
073vrs_A_U7_G8NANNANT00.57AA12
083vrs_A_G8_A9AA1AA10510.22AA10
093vrs_A_A9_G10AAAAA08650.33AA08
103vrs_A_G10_G11AAAAA00640.27AA00
113vrs_A_G11_C12AAAAA00780.18AA00
123vrs_A_C12_C13AAAAA00770.16AA00
133vrs_A_C13_C14AAAAA00900.15AA00
143vrs_A_C14_G15AAAAA08700.21AA08
153vrs_A_G15_C16AAAAA08900.20AA08
163vrs_A_C16_C17AAAAA00720.20AA00
173vrs_A_C17_C18A-BAB05700.25AB05
183vrs_A_C18_A19NANNANT01.72OP19
193vrs_A_A19_A20NANNANT01.02BA16
203vrs_A_A20_A21AAAAA09880.11AA09
213vrs_A_A21_C22NANNANT00.72AA08
223vrs_A_C22_U23AAAAA00730.12AA00
233vrs_A_U23_G24OPNOP06580.32OP06
243vrs_A_G24_C25AAAAA00800.13AA00
253vrs_A_C25_C26AAAAA08870.21AA08
263vrs_A_C26_C27AAAAA00790.27AA00
273vrs_A_C27_U28AAAAA00740.18AA00
283vrs_A_U28_G29AAAAA00810.24AA00
293vrs_A_G29_A30OPNOP03720.36OP03
303vrs_A_A30_A31AAAAA08710.24AA08
313vrs_A_A31_A32AAAAA04810.44AA04
323vrs_A_A32_A33AAAAA08130.69AA08
333vrs_A_A33_G34AAAAA08800.28AA08
343vrs_A_G34_G35AA1AA01750.28AA01
353vrs_A_G35_G36AAAAA08810.27AA08
363vrs_A_G36_C37AAAAA00610.20AA00
373vrs_A_C37_U38AAAAA00690.28AA00
383vrs_A_U38_G39AAAAA00910.12AA00
393vrs_A_G39_A40NANNANT01.22IC04
403vrs_A_A40_U41OPNOP11830.18OP11
413vrs_A_U41_G42OPNOP04710.18OP04
423vrs_A_G42_G43AAAAA00540.30AA00
433vrs_A_G43_C44AAAAA00820.22AA00
443vrs_A_C44_C45AAAAA04640.53AA04
453vrs_A_C45_U46AAAAA00610.18AA00
463vrs_A_U46_C47AAAAA00290.19AA00
473vrs_A_C47_U48AAAAA00600.16AA00
483vrs_A_U48_A49AAAAA00840.15AA00
493vrs_A_A49_C50A-BAB05630.15AB05
503vrs_A_C50_U51NANNANT01.19OP20
513vrs_A_U51_G52NANNANT00.18ZZ1S

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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