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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of the complex comprised of ETS1, RUNX1, CBFBETA, and the tcralpha gene enhancer DNA

Results of the assignment of 56 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013wts_D_DG1_DA2BBBBB00630.32BB00
023wts_D_DA2_DA3BBBBB00560.21BB00
033wts_D_DA3_DG4NANNANT00.37BB05
043wts_D_DG4_DC5BBBBB00500.33BB00
053wts_D_DC5_DC6BBwBB02910.12BB02
063wts_D_DC6_DA7BBBBB00670.27BB00
073wts_D_DA7_DC8miBBB12800.20BB12
083wts_D_DC8_DA9BBwBB16750.35BB16
093wts_D_DA9_DT10BBwBB02830.13BB02
103wts_D_DT10_DC11BBwBB02560.26BB02
113wts_D_DC11_DC12BBwBB02740.15BB02
123wts_D_DC12_DT13BBBBB00750.25BB00
133wts_D_DT13_DC14BBwBB02860.16BB02
143wts_D_DC14_DT15BBwBB02740.25BB02
153wts_E_DA101_DG102BBBBB01710.32BB01
163wts_E_DG102_DA103BBBBB00560.38BB00
173wts_E_DA103_DG104BBBBB00870.21BB00
183wts_E_DG104_DG105B12BB04640.30BB04
193wts_E_DG105_DA106BBBBB00910.16BB00
203wts_E_DA106_DT107BBBBB00930.18BB00
213wts_E_DT107_DG108B12BB04830.18BB04
223wts_E_DG108_DT109BBBBB00650.30BB00
233wts_E_DT109_DG110B12BB04850.20BB04
243wts_E_DG110_DG111BBBBB00720.34BB00
253wts_E_DG111_DC112BBBBB00800.21BB00
263wts_E_DC112_DT113BBBBB00730.31BB00
273wts_E_DT113_DT114BBBBB00980.11BB00
283wts_E_DT114_DC115B12BB04780.25BB04
293wts_I_DG1_DA2BBBBB00690.29BB00
303wts_I_DA2_DA3BBBBB00510.20BB00
313wts_I_DA3_DG4BBwBB02150.43BB02
323wts_I_DG4_DC5BBBBB00570.30BB00
333wts_I_DC5_DC6BBwBB02900.13BB02
343wts_I_DC6_DA7BBBBB00610.23BB00
353wts_I_DA7_DC8miBBB12740.20BB12
363wts_I_DC8_DA9BBwBB16540.45BB16
373wts_I_DA9_DT10BBwBB02800.16BB02
383wts_I_DT10_DC11BBwBB02630.25BB02
393wts_I_DC11_DC12BBwBB02560.25BB02
403wts_I_DC12_DT13BBwBB02400.37BB02
413wts_I_DT13_DC14BBBBB00550.29BB00
423wts_I_DC14_DT15BBwBB02760.22BB02
433wts_J_DA101_DG102BBBBB00690.26BB00
443wts_J_DG102_DA103B12BB04890.18BB04
453wts_J_DA103_DG104BBBBB00870.25BB00
463wts_J_DG104_DG105BB2BB07500.41BB07
473wts_J_DG105_DA106BBBBB00860.20BB00
483wts_J_DA106_DT107BBBBB00910.20BB00
493wts_J_DT107_DG108B12BB04640.22BB04
503wts_J_DG108_DT109BBBBB00590.31BB00
513wts_J_DT109_DG110B12BB04940.16BB04
523wts_J_DG110_DG111BBBBB00840.30BB00
533wts_J_DG111_DC112BBBBB00840.21BB00
543wts_J_DC112_DT113BBBBB00810.29BB00
553wts_J_DT113_DT114BBBBB00970.09BB00
563wts_J_DT114_DC115B-ABA01710.14BA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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