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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of Sco3205, a MarR family transcriptional regulator from Streptomyces coelicolor, in complex with DNA

Results of the assignment of 84 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
013zpl_C_DA1_DA2BB1BB16630.45BB16
023zpl_C_DA2_DA3BBBBB00760.17BB00
033zpl_C_DA3_DG4BBBBB00720.15BB00
043zpl_C_DG4_DA5B-ABA05620.19BA05
053zpl_C_DA5_DT6BBBBB01170.35BB01
063zpl_C_DT6_DT7BBBBB01580.12BB01
073zpl_C_DT7_DG8BBBBB00230.24BB00
083zpl_C_DG8_DA9BBBBB00740.26BB00
093zpl_C_DA9_DG10BBBBB00750.27BB00
103zpl_C_DG10_DA11BBBBB00820.20BB00
113zpl_C_DA11_DT12BBBBB01730.17BB01
123zpl_C_DT12_DC13BBBBB01510.19BB01
133zpl_C_DC13_DT14BBBBB00890.14BB00
143zpl_C_DT14_DC15BBBBB01750.19BB01
153zpl_C_DC15_DA16BBBBB00220.27BB00
163zpl_C_DA16_DA17BBBBB00860.19BB00
173zpl_C_DA17_DT18BBBBB01630.15BB01
183zpl_C_DT18_DC19A-BAB03850.34AB03
193zpl_C_DC19_DT20BBBBB01880.17BB01
203zpl_C_DT20_DT21BBBBB01830.17BB01
213zpl_C_DT21_DT22NANNANT00.41BA08
223zpl_D_DA1_DA2BB1BB16670.46BB16
233zpl_D_DA2_DA3BBBBB00760.17BB00
243zpl_D_DA3_DG4BBBBB00680.12BB00
253zpl_D_DG4_DA5B-ABA05680.19BA05
263zpl_D_DA5_DT6BBBBB01170.35BB01
273zpl_D_DT6_DT7BBBBB01620.11BB01
283zpl_D_DT7_DG8BBBBB00270.23BB00
293zpl_D_DG8_DA9BBBBB00750.25BB00
303zpl_D_DA9_DG10BBBBB00730.27BB00
313zpl_D_DG10_DA11BBBBB00790.20BB00
323zpl_D_DA11_DT12BBBBB01740.14BB01
333zpl_D_DT12_DC13BBBBB01550.20BB01
343zpl_D_DC13_DT14BBBBB00870.13BB00
353zpl_D_DT14_DC15BBBBB01780.19BB01
363zpl_D_DC15_DA16BBBBB00240.28BB00
373zpl_D_DA16_DA17BBBBB00840.20BB00
383zpl_D_DA17_DT18BBBBB01670.14BB01
393zpl_D_DT18_DC19A-BAB03870.33AB03
403zpl_D_DC19_DT20BBBBB01870.17BB01
413zpl_D_DT20_DT21BBBBB01830.17BB01
423zpl_D_DT21_DT22NANNANT00.41BA08
433zpl_G_DA1_DA2BB1BB16530.43BB16
443zpl_G_DA2_DA3BBBBB00760.20BB00
453zpl_G_DA3_DG4BBBBB00710.17BB00
463zpl_G_DG4_DA5B-ABA05650.19BA05
473zpl_G_DA5_DT6BBBBB01230.32BB01
483zpl_G_DT6_DT7BBBBB01630.11BB01
493zpl_G_DT7_DG8BBBBB00280.23BB00
503zpl_G_DG8_DA9BBBBB00740.24BB00
513zpl_G_DA9_DG10BBBBB00750.25BB00
523zpl_G_DG10_DA11BBBBB00790.20BB00
533zpl_G_DA11_DT12BBBBB01730.16BB01
543zpl_G_DT12_DC13BBBBB01490.19BB01
553zpl_G_DC13_DT14BBBBB00890.13BB00
563zpl_G_DT14_DC15BBBBB01750.19BB01
573zpl_G_DC15_DA16BBBBB01670.29BB01
583zpl_G_DA16_DA17BBBBB00850.20BB00
593zpl_G_DA17_DT18BBBBB01680.15BB01
603zpl_G_DT18_DC19A-BAB03860.34AB03
613zpl_G_DC19_DT20BBBBB01890.17BB01
623zpl_G_DT20_DT21BBBBB01850.16BB01
633zpl_G_DT21_DT22NANNANT00.62AA09
643zpl_H_DA1_DA2A-BAB01680.30AB01
653zpl_H_DA2_DA3BBBBB00760.20BB00
663zpl_H_DA3_DG4BBBBB00720.13BB00
673zpl_H_DG4_DA5B-ABA05740.18BA05
683zpl_H_DA5_DT6BBBBB01220.33BB01
693zpl_H_DT6_DT7BBBBB01680.10BB01
703zpl_H_DT7_DG8BBBBB00270.24BB00
713zpl_H_DG8_DA9BBBBB00740.25BB00
723zpl_H_DA9_DG10BBBBB00740.27BB00
733zpl_H_DG10_DA11BBBBB00790.20BB00
743zpl_H_DA11_DT12BBBBB01720.16BB01
753zpl_H_DT12_DC13BBBBB01510.20BB01
763zpl_H_DC13_DT14BBBBB00880.11BB00
773zpl_H_DT14_DC15BBBBB01750.19BB01
783zpl_H_DC15_DA16BBBBB01630.31BB01
793zpl_H_DA16_DA17BBBBB00840.22BB00
803zpl_H_DA17_DT18BBBBB01660.15BB01
813zpl_H_DT18_DC19A-BAB03870.33AB03
823zpl_H_DC19_DT20BBBBB01890.17BB01
833zpl_H_DT20_DT21BBBBB01820.17BB01
843zpl_H_DT21_DT22NANNANT00.61AA09

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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