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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

DISORDER AND TWIN REFINEMENT OF RNA HEPTAMER DOUBLE HELIX

Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
01464d_A_U1_A2AAAAA00940.10AA00
02464d_A_A2_G3AAAAA00800.18AA00
03464d_A_G3_C4AAAAA00860.17AA00
04464d_A_C4_U5AAAAA00820.21AA00
05464d_A_U5_C6AAAAA00910.17AA00
06464d_A_C6_C7AAAAA00910.17AA00
07464d_B_G8_G9AAAAA00790.14AA00
08464d_B_G9_G10AAAAA00710.20AA00
09464d_B_G10_G11AAAAA00800.17AA00
10464d_B_G11_C12AAAAA00840.14AA00
11464d_B_C12_IU13AAAAA00810.18AA00
12464d_B_IU13_A14AAAAA00810.12AA00
13464d_C_U1_A2AAAAA00850.12AA00
14464d_C_A2_G3AAAAA00730.26AA00
15464d_C_G3_C4AAAAA00780.24AA00
16464d_C_C4_U5AAAAA00820.23AA00
17464d_C_U5_C6AAAAA00770.22AA00
18464d_C_C6_C7AAAAA00850.14AA00
19464d_D_G8_G9AAAAA00830.08AA00
20464d_D_G9_G10AAAAA00240.33AA00
21464d_D_G10_G11AAAAA00480.16AA00
22464d_D_G11_C12AAAAA00710.26AA00
23464d_D_C12_IU13AAAAA00520.27AA00
24464d_D_IU13_A14AAAAA00870.13AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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