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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
The NF-Y transcription factor is structurally and functionally a sequence specific histone

Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014awl_I_DT1_DT2A-BAB05590.25AB05
024awl_I_DT2_DC3BBBBB00750.42BB00
034awl_I_DC3_DT4NANNANT00.63BB10
044awl_I_DT4_DG5miBBB10470.33BB10
054awl_I_DG5_DA6NANNANT00.38BB07
064awl_I_DA6_DG7NANNANT00.36BA08
074awl_I_DG7_DC8NANNANT00.41AB03
084awl_I_DC8_DC9NANNANT00.67BA10
094awl_I_DC9_DA10A-BAB05320.52AB05
104awl_I_DA10_DA11BB2BB07200.41BB07
114awl_I_DA11_DT12NANNANT00.57BA08
124awl_I_DT12_DC13NANNANT00.49AB03
134awl_I_DC13_DA14BB2BB07660.21BB07
144awl_I_DA14_DC15B-ABA08290.38BA08
154awl_I_DC15_DC16miBBB14120.55BB14
164awl_I_DC16_DG17A-BAB03680.26AB03
174awl_I_DG17_DA18miBBB10480.29BB10
184awl_I_DA18_DG19NANNANT00.50BB05
194awl_I_DG19_DC20NANNANT00.48BA10
204awl_I_DC20_DT21NANNANT00.61BB16
214awl_I_DT21_DC22BBBBB00300.33BB00
224awl_I_DC22_DG23miBBB10850.22BB10
234awl_I_DG23_DA24NANNANT00.58BB17
244awl_I_DA24_DT25A-BAB02540.33AB02
254awl_J_DA-25_DT-24NANNANT00.54BB10
264awl_J_DT-24_DC-23miBBB10650.26BB10
274awl_J_DC-23_DG-22B12BB04190.34BB04
284awl_J_DG-22_DA-21BBBBB00370.34BB00
294awl_J_DA-21_DG-20B-ABA05150.37BA05
304awl_J_DG-20_DC-19NANNANT00.50BA09
314awl_J_DC-19_DT-18NANNANT00.48AB03
324awl_J_DT-18_DC-17B12BB04730.43BB04
334awl_J_DC-17_DG-16miBBB10670.31BB10
344awl_J_DG-16_DG-15miBBB14600.51BB14
354awl_J_DG-15_DT-14BBBBB00270.33BB00
364awl_J_DT-14_DG-13B12BB04270.43BB04
374awl_J_DG-13_DA-12B12BB04450.31BB04
384awl_J_DA-12_DT-11BBBBB00740.29BB00
394awl_J_DT-11_DT-10B-ABA05320.34BA05
404awl_J_DT-10_DG-9A-BAB01210.43AB01
414awl_J_DG-9_DG-8miBBB10430.49BB10
424awl_J_DG-8_DC-7miBBB10220.45BB10
434awl_J_DC-7_DT-6BBBBB00550.21BB00
444awl_J_DT-6_DC-5BBBBB00420.45BB00
454awl_J_DC-5_DA-4BB2BB08300.43BB08
464awl_J_DA-4_DG-3BBBBB00220.64BB00
474awl_J_DG-3_DA-2BB2BB07880.18BB07
484awl_J_DA-2_DA-1B-ABA05300.45BA05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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