Click the Table/Summary/Similar tabs for more details.
Center view on step or molecule.
Show reference model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Ternary complex of Bacillus DNA Polymerase I Large Fragment F710Y, DNA duplex, and rCTP (paired with dG of template) in presence of Mg2+

Results of the assignment of 33 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014dse_B_DC21_DC22NANNANT00.28AB05
024dse_B_DC22_DT23BBBBB00520.20BB00
034dse_B_DT23_DG24BBBBB00710.32BB00
044dse_B_DG24_DA25B-ABA08860.24BA08
054dse_B_DA25_DC26NANNANT00.45AB04
064dse_B_DC26_DT27NANNANT00.43BA05
074dse_B_DT27_DC28AAAAA00780.23AA00
084dse_C_DG4_DG5AAAAA00700.15AA00
094dse_C_DG5_DA6AA1AA01950.13AA01
104dse_C_DA6_DG7A-BAB04870.13AB04
114dse_C_DG7_DT8BBBBB01790.18BB01
124dse_C_DT8_DC9B-ABA05870.18BA05
134dse_C_DC9_DA10A-BAB01820.13AB01
144dse_C_DA10_DG11BBBBB00790.18BB00
154dse_C_DG11_DG12BBBBB00700.25BB00
164dse_E_DC21_DC22A-BAB01190.34AB01
174dse_E_DC22_DT23BBBBB01680.12BB01
184dse_E_DT23_DG24BBBBB00330.32BB00
194dse_E_DG24_DA25B-ABA13970.05BA13
204dse_E_DA25_DC26A-BAB0180.42AB01
214dse_E_DC26_DT27B-ABA01140.33BA01
224dse_E_DT27_DC28AAAAA00800.21AA00
234dse_F_DA1_DT2BBBBB01520.38BB01
244dse_F_DT2_DG3NANNANT01.82OP10
254dse_F_DG3_DG4NANNANT00.32AB04
264dse_F_DG4_DG5AAAAA09310.46AA09
274dse_F_DG5_DA6AA1AA01940.12AA01
284dse_F_DA6_DG7A-BAB04850.14AB04
294dse_F_DG7_DT8BBBBB00820.13BB00
304dse_F_DT8_DC9B-ABA05880.17BA05
314dse_F_DC9_DA10A-BAB03810.35AB03
324dse_F_DA10_DG11BBBBB00850.18BB00
334dse_F_DG11_DG12BBBBB00780.25BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N