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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with self complementary DNA, Se-dGTP and Calcium

Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014dwi_B_DA1_DC2NANNANT01.83IC03
024dwi_B_DC2_DT3NANNANT00.86OP12
034dwi_B_DT3_DG4AAAAA00860.10AA00
044dwi_B_DG4_DG5AA1AA01890.15AA01
054dwi_B_DG5_DA6A-BAB05670.28AB05
064dwi_B_DA6_DT7BBBBB00900.13BB00
074dwi_B_DT7_DC8B12BB04800.19BB04
084dwi_B_DC8_DC9B-ABA01660.14BA01
094dwi_B_DC9_DA10A-BAB01730.22AB01
104dwi_C_DT3_DG4NANNANT00.40BB10
114dwi_C_DG4_DG5NANNANT00.36BB04
124dwi_C_DG5_DA6BBBBB00860.17BB00
134dwi_C_DA6_DT7BBBBB00810.23BB00
144dwi_C_DT7_DC8B-ABA08570.29BA08
154dwi_C_DC8_DC9AAAAA00870.23AA00
164dwi_C_DC9_DA10A-BAB05840.21AB05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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