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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Pyrococcus abyssi B family DNA polymerase bound to a dsDNA, in edition mode

Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014flu_P_DC1_DG2NANNANT00.57BB16
024flu_P_DG2_DA3BBBBB00820.20BB00
034flu_P_DA3_DT4BBBBB01820.22BB01
044flu_P_DT4_DC5BBBBB01750.21BB01
054flu_P_DC5_DA6B-ABA01110.36BA01
064flu_P_DA6_DC7AAAAA00130.33AA00
074flu_P_DC7_DG8NANNANT00.51AB03
084flu_P_DG8_DG9NANNANT01.43BB2S
094flu_P_DG9_DG10NANNANT00.44AAS1
104flu_P_DG10_DG11NANNANT00.49AA02
114flu_T_DG1_DC2NANNANT01.31OP18
124flu_T_DC2_DG3NANNANT00.49OP11
134flu_T_DG3_DT4NANNANT00.61BA10
144flu_T_DT4_DA5NANNANT01.63OP21
154flu_T_DA5_DC6BBBBB01660.32BB01
164flu_T_DC6_DG7A-BAB03330.27AB03
174flu_T_DG7_DT8BBBBB01640.30BB01
184flu_T_DT8_DG9BBBBB00300.39BB00
194flu_T_DG9_DA10B12BB04240.24BB04
204flu_T_DA10_DT11BBBBB00270.22BB00
214flu_T_DT11_DC12BBBBB01590.34BB01
224flu_T_DC12_DG13BBBBB00660.30BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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