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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of p53 core domain in complex with DNA

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014hje_E_DT1_DC2miBBB15220.30BB15
024hje_E_DC2_DA3BBBBB00780.18BB00
034hje_E_DA3_DC4BBBBB00640.31BB00
044hje_E_DC4_DA5B12BB04790.29BB04
054hje_E_DA5_DA6BBBBB00700.36BB00
064hje_E_DA6_DG7B12BB04730.28BB04
074hje_E_DG7_DT8BBBBB00650.28BB00
084hje_E_DT8_DT9BBBBB01750.17BB01
094hje_E_DT9_DA10BBBBB00160.23BB00
104hje_E_DA10_DG11NANNANT00.75BB02
114hje_E_DG11_DA12NANNANT00.64BB16
124hje_E_DA12_DG13BBBBB00700.21BB00
134hje_E_DG13_DA14B-ABA08320.38BA08
144hje_E_DA14_DC15NANNANT00.52BA05
154hje_E_DC15_DA16BBwBB16260.55BB16
164hje_E_DA16_DA17BBBBB00750.35BB00
174hje_E_DA17_DG18B12BB04630.32BB04
184hje_E_DG18_DC19BBBBB00660.19BB00
194hje_E_DC19_DC20BBBBB00350.36BB00
204hje_E_DC20_DT21BB2BB07250.45BB07
214hje_F_DA1_DG2miBBB15340.53BB15
224hje_F_DG2_DG3BBBBB00350.29BB00
234hje_F_DG3_DC4BBBBB01320.38BB01
244hje_F_DC4_DT5BBBBB00450.26BB00
254hje_F_DT5_DT6BBBBB00730.40BB00
264hje_F_DT6_DG7B12BB04800.26BB04
274hje_F_DG7_DT8BBBBB00670.28BB00
284hje_F_DT8_DC9BBBBB01680.16BB01
294hje_F_DC9_DT10BBBBB00100.27BB00
304hje_F_DT10_DC11NANNANT00.65BB10
314hje_F_DC11_DT12NANNANT00.67BB10
324hje_F_DT12_DA13NANNANT00.38BB02
334hje_F_DA13_DA14B12BB04110.27BB04
344hje_F_DA14_DC15B-ABA01340.36BA01
354hje_F_DC15_DT16A-BAB01510.35AB01
364hje_F_DT16_DT17BBBBB00650.43BB00
374hje_F_DT17_DG18B12BB04590.30BB04
384hje_F_DG18_DT19BBBBB00680.27BB00
394hje_F_DT19_DG20BBBBB00410.24BB00
404hje_F_DG20_DA21NANNANT00.63BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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