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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Polymerase-DNA Complex

Results of the assignment of 63 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014ir1_G_DT837_DC838BBBBB00530.38BB00
024ir1_G_DC838_DT839NANNANT00.68AB02
034ir1_G_DT839_DA840NANNANT00.50OP06
044ir1_G_DA840_DG841BBBBB00750.27BB00
054ir1_G_DG841_DG842B-ABA01230.36BA01
064ir1_G_DG842_DG843AA1AA01460.18AA01
074ir1_G_DG843_DT844A-BAB01180.33AB01
084ir1_G_DT844_DC845BBBBB00660.18BB00
094ir1_G_DC845_DC846BBBBB01930.11BB01
104ir1_G_DC846_DT847BBBBB00770.14BB00
114ir1_G_DT847_DA848BBBBB00550.26BB00
124ir1_G_DA848_DG849B12BB04780.18BB04
134ir1_G_DG849_DG850BBBBB00220.19BB00
144ir1_G_DG850_DA851BBBBB00760.25BB00
154ir1_G_DA851_DC852BBBBB00230.37BB00
164ir1_G_DC852_DC853BBBBB00400.29BB00
174ir1_G_DC853_DC854miBBB10480.32BB10
184ir1_H_DG860_DG861B12BB04320.28BB04
194ir1_H_DG861_DG862BB1BB03870.29BB03
204ir1_H_DG862_DT863BBBBB00670.42BB00
214ir1_H_DT863_DC864B12BB04750.22BB04
224ir1_H_DC864_DC865BBBBB00320.18BB00
234ir1_H_DC865_DT866BBBBB00740.20BB00
244ir1_H_DT866_DA867BBBBB00700.16BB00
254ir1_H_DA867_DG868BBBBB00750.21BB00
264ir1_H_DG868_DG869BBBBB00700.23BB00
274ir1_H_DG869_DA870BBBBB00900.13BB00
284ir1_H_DA870_DC871BBBBB01640.22BB01
294ir1_H_DC871_DC872BBBBB00290.23BB00
304ir1_H_DC872_DC873BBBBB01730.25BB01
314ir1_B_DT837_DC838NANNANT00.89IC06
324ir1_B_DC838_DT839NANNANT01.21BA16
334ir1_B_DT839_DA840NANNANT00.69OP06
344ir1_B_DA840_DG841BBBBB00740.29BB00
354ir1_B_DG841_DG842B-ABA10420.26BA10
364ir1_B_DG842_DG843AA1AA01170.39AA01
374ir1_B_DG843_DT844A-BAB04550.32AB04
384ir1_B_DT844_DC845BBBBB00470.22BB00
394ir1_B_DC845_DC846BBBBB00780.14BB00
404ir1_B_DC846_DT847BBBBB00790.14BB00
414ir1_B_DT847_DA848B12BB04680.14BB04
424ir1_B_DA848_DG849miBBB15180.39BB15
434ir1_B_DG849_DG850BB2BB07260.40BB07
444ir1_B_DG850_DA851BB2BB07250.32BB07
454ir1_B_DA851_DC852miBBB15750.16BB15
464ir1_B_DC852_DC853BBBBB00720.35BB00
474ir1_B_DC853_DC854B12BB04410.23BB04
484ir1_C_DC857_DT858NANNANT01.26IC03
494ir1_C_DT858_DA859NANNANT01.93OP01
504ir1_C_DA859_DG860BB2BB07850.13BB07
514ir1_C_DG860_DG861BBBBB00440.41BB00
524ir1_C_DG861_DG862BB2BB07730.24BB07
534ir1_C_DG862_DT863BBBBB01680.11BB01
544ir1_C_DT863_DC864miBBB15360.35BB15
554ir1_C_DC864_DC865NANNANT00.35BB05
564ir1_C_DC865_DT866BBBBB01490.41BB01
574ir1_C_DT866_DA867BBBBB00630.18BB00
584ir1_C_DA867_DG868BBBBB00890.20BB00
594ir1_C_DG868_DG869B12BB04580.30BB04
604ir1_C_DG869_DA870BBBBB00440.20BB00
614ir1_C_DA870_DC871B-ABA05640.16BA05
624ir1_C_DC871_DC872BBBBB00190.22BB00
634ir1_C_DC872_DC873BBBBB01660.20BB01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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