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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Auto-inhibited ERG Ets Domain-DNA Complex

Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014iri_B_DG1_DA2A-BAB01120.32AB01
024iri_B_DA2_DC3BBBBB01890.23BB01
034iri_B_DC3_DC4BBBBB01560.17BB01
044iri_B_DC4_DG5BBBBB00110.36BB00
054iri_B_DG5_DG6miBBB10310.44BB10
064iri_B_DG6_DA7BBBBB00250.31BB00
074iri_B_DA7_DA8BBBBB00520.25BB00
084iri_B_DA8_DG9miBBB10750.31BB10
094iri_B_DG9_DT10BBBBB00340.24BB00
104iri_B_DT10_DG11BB2BB07250.55BB07
114iri_B_DG11_DG12NANNANT00.51BB08
124iri_C_DC13_DC14B-ABA08330.60BA08
134iri_C_DC14_DA15NANNANT00.72BB14
144iri_C_DA15_DC16miBBB12490.25BB12
154iri_C_DC16_DT17NANNANT00.34AB04
164iri_C_DT17_DT18BBBBB01890.19BB01
174iri_C_DT18_DC19BBBBB01470.29BB01
184iri_C_DC19_DC20NANNANT00.34AB03
194iri_C_DC20_DG21B12BB04440.24BB04
204iri_C_DG21_DG22NANNANT00.50BA08
214iri_C_DG22_DT23AAAAA04700.42AA04
224iri_C_DT23_DC24AA1AA01450.34AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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