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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of a hyperactive mutant of response regulator KdpE complexed to its promoter DNA

Results of the assignment of 58 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014kfc_Y_DC1_DA2A-BAB03740.35AB03
024kfc_Y_DA2_DT3B-ABA05890.18BA05
034kfc_Y_DT3_DT4BBBBB01540.28BB01
044kfc_Y_DT4_DT5BBBBB01880.13BB01
054kfc_Y_DT5_DT6BBBBB01650.22BB01
064kfc_Y_DT6_DT7BBBBB01700.25BB01
074kfc_Y_DT7_DA8BBBBB01860.14BB01
084kfc_Y_DA8_DT9BBBBB00520.26BB00
094kfc_Y_DT9_DA10B12BB04830.17BB04
104kfc_Y_DA10_DC11B-ABA01650.16BA01
114kfc_Y_DC11_DT12NANNANT00.43AA02
124kfc_Y_DT12_DT13BBBBB01570.26BB01
134kfc_Y_DT13_DT14BBBBB01650.21BB01
144kfc_Y_DT14_DT15BBBBB00410.24BB00
154kfc_Y_DT15_DT16B-ABA05870.16BA05
164kfc_Y_DT16_DT17B-ABA05630.18BA05
174kfc_Y_DT17_DT18BBBBB01550.26BB01
184kfc_Y_DT18_DA19BBBBB01780.20BB01
194kfc_Y_DA19_DC20BBBBB00560.32BB00
204kfc_Y_DC20_DA21B12BB04570.31BB04
214kfc_Y_DA21_DC22BBBBB01140.31BB01
224kfc_Y_DC22_DC23NANNANT00.32BB10
234kfc_Y_DC23_DC24B12BB04710.23BB04
244kfc_Y_DC24_DC25BB1BB02200.40BB02
254kfc_Y_DC25_DG26BBBBB00440.27BB00
264kfc_Y_DG26_DC27BBBBB00170.41BB00
274kfc_Y_DC27_DC28BB2BB07400.31BB07
284kfc_Y_DC28_DC29NANNANT00.39BB03
294kfc_Y_DC29_DG30NANNANT00.70IC04
304kfc_Z_DC1_DG2NANNANT00.46BB16
314kfc_Z_DG2_DG3BB2BB07790.35BB07
324kfc_Z_DG3_DG4BB1BB11510.32BB11
334kfc_Z_DG4_DC5BB1BB02190.47BB02
344kfc_Z_DC5_DG6BB1BB03380.29BB03
354kfc_Z_DG6_DG7B12BB04300.50BB04
364kfc_Z_DG7_DG8B-ABA13390.46BA13
374kfc_Z_DG8_DG9NANNANT00.39BB16
384kfc_Z_DG9_DT10B-ABA05440.27BA05
394kfc_Z_DT10_DG11NANNANT00.67BB16
404kfc_Z_DG11_DT12NANNANT00.51BA08
414kfc_Z_DT12_DA13A-BAB03800.29AB03
424kfc_Z_DA13_DA14NANNANT00.43BA09
434kfc_Z_DA14_DA15NANNANT00.39AA06
444kfc_Z_DA15_DA16A-BAB02450.45AB02
454kfc_Z_DA16_DA17BBBBB00850.16BB00
464kfc_Z_DA17_DA18BB1BB02740.27BB02
474kfc_Z_DA18_DA19BBBBB01580.34BB01
484kfc_Z_DA19_DG20BBBBB01590.29BB01
494kfc_Z_DG20_DT21BBBBB01270.28BB01
504kfc_Z_DT21_DA22BBBBB00380.21BB00
514kfc_Z_DA22_DT23BBBBB01340.25BB01
524kfc_Z_DT23_DA24BBBBB01570.34BB01
534kfc_Z_DA24_DA25BBBBB00690.28BB00
544kfc_Z_DA25_DA26B12BB04870.17BB04
554kfc_Z_DA26_DA27BBBBB00650.20BB00
564kfc_Z_DA27_DA28BBBBB00730.23BB00
574kfc_Z_DA28_DT29BBBBB01230.25BB01
584kfc_Z_DT29_DG30A-BAB03660.30AB03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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