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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of the response regulator KdpE complexed to DNA in an active-like conformation

Results of the assignment of 46 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014kny_Y_DC1_DA2A-BAB01410.19AB01
024kny_Y_DA2_DT3B-ABA05960.18BA05
034kny_Y_DT3_DT4BBBBB01550.27BB01
044kny_Y_DT4_DT5BBBBB01630.17BB01
054kny_Y_DT5_DT6BBBBB01500.24BB01
064kny_Y_DT6_DT7BBBBB01680.21BB01
074kny_Y_DT7_DA8BBBBB01820.13BB01
084kny_Y_DA8_DT9BBBBB00780.21BB00
094kny_Y_DT9_DA10B12BB04910.15BB04
104kny_Y_DA10_DC11B-ABA01530.19BA01
114kny_Y_DC11_DT12NANNANT00.50AA02
124kny_Y_DT12_DT13B-ABA05250.28BA05
134kny_Y_DT13_DT14BBBBB01380.23BB01
144kny_Y_DT14_DT15BBBBB01620.21BB01
154kny_Y_DT15_DT16B-ABA05680.12BA05
164kny_Y_DT16_DT17B-ABA05540.23BA05
174kny_Y_DT17_DT18BBBBB01430.31BB01
184kny_Y_DT18_DA19B-ABA05310.30BA05
194kny_Y_DA19_DC20A-BAB05800.24AB05
204kny_Y_DC20_DA21NANNANT00.44BB11
214kny_Y_DA21_DC22AAAAA02130.71AA02
224kny_Y_DC22_DC23NANNANT00.61AB03
234kny_Y_DC23_DC24BB2BB07650.20BB07
244kny_Z_DG7_DG8NANNANT00.73BA17
254kny_Z_DG8_DG9BBBBB01710.24BB01
264kny_Z_DG9_DT10B-ABA05100.30BA05
274kny_Z_DT10_DG11NANNANT00.49AA04
284kny_Z_DG11_DT12NANNANT00.52BB03
294kny_Z_DT12_DA13NANNANT00.56AA09
304kny_Z_DA13_DA14AAAAA00300.40AA00
314kny_Z_DA14_DA15AA1AA01260.47AA01
324kny_Z_DA15_DA16NANNANT00.57AB02
334kny_Z_DA16_DA17BBBBB00730.11BB00
344kny_Z_DA17_DA18BBBBB00840.18BB00
354kny_Z_DA18_DA19B-ABA08720.42BA08
364kny_Z_DA19_DG20BBBBB01510.27BB01
374kny_Z_DG20_DT21BBBBB00220.30BB00
384kny_Z_DT21_DA22BBBBB00340.22BB00
394kny_Z_DA22_DT23B-ABA01430.20BA01
404kny_Z_DT23_DA24A-BAB01560.34AB01
414kny_Z_DA24_DA25BBBBB00740.32BB00
424kny_Z_DA25_DA26B12BB04680.22BB04
434kny_Z_DA26_DA27BBBBB00800.16BB00
444kny_Z_DA27_DA28BBBBB00790.18BB00
454kny_Z_DA28_DT29B-ABA08720.44BA08
464kny_Z_DT29_DG30A-BAB03800.32AB03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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