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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Structure of Thermus thermophilus Argonaute bound to guide DNA and cleaved target DNA with Mn2+

Results of the assignment of 37 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014n76_C_DT1_DG2NANNANT00.90OP21
024n76_C_DG2_DA3B-ABA01710.28BA01
034n76_C_DA3_DG4AAAAA00720.29AA00
044n76_C_DG4_DG5NANNANT00.32AA02
054n76_C_DG5_DT6A-BAB03530.30AB03
064n76_C_DT6_DA7B-ABA10760.45BA10
074n76_C_DA7_DG8AAAAA00720.14AA00
084n76_C_DG8_DT9AAAAA00900.16AA00
094n76_C_DT9_DA10AAAAA00730.26AA00
104n76_E_DT1_DG2NANNANT00.90OP21
114n76_E_DG2_DA3B-ABA01690.28BA01
124n76_E_DA3_DG4AAAAA00710.29AA00
134n76_E_DG4_DG5NANNANT00.32AA02
144n76_E_DG5_DT6A-BAB03510.30AB03
154n76_E_DT6_DA7B-ABA10750.45BA10
164n76_E_DA7_DG8AAAAA00710.14AA00
174n76_E_DG8_DT9AAAAA00900.15AA00
184n76_E_DT9_DA10AAAAA00730.27AA00
194n76_E_DA10_DG11AAAAA04890.28AA04
204n76_D_DT10_DA11NANNANT00.43AA10
214n76_D_DA11_DC12AAAAA08910.21AA08
224n76_D_DC12_DT13A-BAB05610.25AB05
234n76_D_DT13_DA14BBBBB01450.24BB01
244n76_D_DA14_DC15BBBBB00590.18BB00
254n76_D_DC15_DC16BBBBB01630.21BB01
264n76_D_DC16_DT17B-ABA05640.18BA05
274n76_D_DT17_DC18A-BAB03170.23AB03
284n76_D_DC18_DG19NANNANT01.93IC03
294n76_F_DT10_DA11AA1AA10390.47AA10
304n76_F_DA11_DC12AAAAA08720.27AA08
314n76_F_DC12_DT13A-BAB04800.22AB04
324n76_F_DT13_DA14BBBBB00160.25BB00
334n76_F_DA14_DC15BBBBB00470.23BB00
344n76_F_DC15_DC16BBBBB01760.14BB01
354n76_F_DC16_DT17BBBBB01550.27BB01
364n76_F_DT17_DC18BBBBB0080.43BB00
374n76_F_DC18_DG19NANNANT01.98IC03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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