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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Structure of Thermus thermophilus Argonaute bound to guide DNA 19-mer and target DNA in the presence of MN2+

Results of the assignment of 58 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014nca_C_DT1_DG2NANNANT00.93OP21
024nca_C_DG2_DA3B-ABA01560.28BA01
034nca_C_DA3_DG4AAAAA00460.33AA00
044nca_C_DG4_DG5A-BAB01770.23AB01
054nca_C_DG5_DT6BBBBB01900.19BB01
064nca_C_DT6_DA7B-ABA10470.44BA10
074nca_C_DA7_DG8AAAAA08870.17AA08
084nca_C_DG8_DT9AAAAA00620.24AA00
094nca_C_DT9_DA10AA1AA01640.40AA01
104nca_C_DA10_DG11AAAAA08790.27AA08
114nca_C_DG11_DG12NANNANT00.29AA04
124nca_C_DG12_DT13NANNANT00.69BB16
134nca_C_DT13_DT14BBBBB00840.15BB00
144nca_C_DT14_DG15BBBBB00830.42BB00
154nca_C_DG15_DT16B12BB04520.35BB04
164nca_D_DT10_DA11NANNANT00.40BB16
174nca_D_DA11_DC12B-ABA0580.37BA05
184nca_D_DC12_DT13A-BAB05240.22AB05
194nca_D_DT13_DA14BBBBB00630.25BB00
204nca_D_DA14_DC15BBBBB01320.19BB01
214nca_D_DC15_DC16A-BAB01110.33AB01
224nca_D_DC16_DT17B-ABA01160.23BA01
234nca_D_DT17_DC18A-BAB03930.18AB03
244nca_D_DC18_DG19NANNANT01.90IC05
254nca_E_DT1_DG2NANNANT00.94OP21
264nca_E_DG2_DA3B-ABA01190.27BA01
274nca_E_DA3_DG4AAAAA00480.31AA00
284nca_E_DG4_DG5A-BAB01730.22AB01
294nca_E_DG5_DT6BBBBB00850.16BB00
304nca_E_DT6_DA7B-ABA10860.46BA10
314nca_E_DA7_DG8AAAAA00760.22AA00
324nca_E_DG8_DT9AAAAA00900.16AA00
334nca_E_DT9_DA10AAAAA00680.22AA00
344nca_E_DA10_DG11AAAAA08610.26AA08
354nca_E_DG11_DG12A-BAB04440.42AB04
364nca_E_DG12_DT13BBBBB00190.27BB00
374nca_E_DT13_DT14BBBBB00880.14BB00
384nca_E_DT14_DG15BBBBB00770.41BB00
394nca_E_DG15_DT16B12BB04520.33BB04
404nca_F_DT10_DA11AAAAA00210.35AA00
414nca_F_DA11_DC12AAAAA00300.36AA00
424nca_F_DC12_DT13NANNANT00.47AB04
434nca_F_DT13_DA14BBBBB00340.34BB00
444nca_F_DA14_DC15BBBBB01850.20BB01
454nca_F_DC15_DC16BBBBB00480.33BB00
464nca_F_DC16_DT17B-ABA01170.15BA01
474nca_F_DT17_DC18A-BAB01430.32AB01
484nca_F_DC18_DG19NANNANT01.93IC05
494nca_G_DA1_DC2BBBBB00860.25BB00
504nca_G_DC2_DA3BBBBB00350.29BB00
514nca_G_DA3_DA4BBBBB00260.41BB00
524nca_G_DA4_DC5B-ABA10440.29BA10
534nca_G_DC5_DC6AAAAA00860.16AA00
544nca_H_DA4_DC5BBBBB00490.39BB00
554nca_H_DC5_DA6NANNANT00.35BB10
564nca_H_DA6_DA7BBBBB00630.33BB00
574nca_H_DA7_DC8B-ABA10530.30BA10
584nca_H_DC8_DC9AAAAA00830.18AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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