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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of human dna polymerase eta in ternary complex with native dna and incoming nucleotide (dcp)

Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014o3n_T_DA2_DT3NANNANT02.24OP19
024o3n_T_DT3_DG4NANNANT00.78BB16
034o3n_T_DG4_DA5BBBBB00840.15BB00
044o3n_T_DA5_DT6B-ABA09720.31BA09
054o3n_T_DT6_DG7NANNANT00.50AB04
064o3n_T_DG7_DA8BBBBB00110.44BB00
074o3n_T_DA8_DC9BBBBB00920.17BB00
084o3n_T_DC9_DG10B12BB04800.23BB04
094o3n_T_DG10_DC11BBBBB00810.18BB00
104o3n_T_DC11_DT12B-ABA05880.11BA05
114o3n_P_DA1_DG2BBwBB16460.43BB16
124o3n_P_DG2_DC3BBBBB00610.28BB00
134o3n_P_DC3_DG4BBBBB01820.13BB01
144o3n_P_DG4_DT5BBBBB00760.25BB00
154o3n_P_DT5_DC6B-ABA05890.09BA05
164o3n_P_DC6_DA7B-ABA05160.32BA05
174o3n_P_DA7_DT.A8A-BAB01290.29AB01
184o3n_P_DA7_DT.B8NANNANT00.53AB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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