Click the Table/Summary/Similar tabs for more details.
Center view on step or molecule.
Show reference model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Dodecamer structure of 5-formylcytosine containing DNA

Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014qc7_A_DC1_DG2B12BB04360.20BB04
024qc7_A_DG2_DC3B-ABA05820.22BA05
034qc7_A_DC3_DG4A-BAB01700.09AB01
044qc7_A_DG4_DA5BBBBB00920.20BB00
054qc7_A_DA5_DA6BBBBB00870.16BB00
064qc7_A_DA6_DT7BBBBB00460.22BB00
074qc7_A_DT7_DT8BBBBB00600.24BB00
084qc7_A_DT8_5FC9BBBBB01900.14BB01
094qc7_A_5FC9_DG10BBBBB00550.33BB00
104qc7_A_DG10_DC11BB2BB07780.27BB07
114qc7_A_DC11_DG12B-ABA05560.39BA05
124qc7_B_DC13_DG14BB2BB07460.38BB07
134qc7_B_DG14_DC15B-ABA05640.21BA05
144qc7_B_DC15_DG16A-BAB01330.20AB01
154qc7_B_DG16_DA17BBBBB00740.27BB00
164qc7_B_DA17_DA18BBBBB01720.17BB01
174qc7_B_DA18_DT19BBBBB01780.20BB01
184qc7_B_DT19_DT20BBBBB00460.28BB00
194qc7_B_DT20_5FC21B-ABA05890.16BA05
204qc7_B_5FC21_DG22A-BAB03840.26AB03
214qc7_B_DG22_DC23B-ABA17840.25BA17
224qc7_B_DC23_DG24B-ABA05430.32BA05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N