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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of the pre-catalytic ternary complex of DNA polymerase lambda with a templating A and an incoming dTTP

Results of the assignment of 17 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
014xus_D_DG1_DC2A-BAB05420.21AB05
024xus_D_DC2_DC3BBBBB00800.21BB00
034xus_D_DC3_DG4B12BB04910.16BB04
044xus_P_DC1_DA2A-BAB01640.25AB01
054xus_P_DA2_DG3BBBBB01580.20BB01
064xus_P_DG3_DT4B-ABA05790.17BA05
074xus_P_DT4_DA5B-ABA05410.27BA05
084xus_T_DC1_DG2BBBBB00410.45BB00
094xus_T_DG2_DG3BB2BB07860.26BB07
104xus_T_DG3_DC4B-ABA01760.14BA01
114xus_T_DC4_DA5NANNANT01.19OP21
124xus_T_DA5_DG6BBBBB00570.35BB00
134xus_T_DG6_DT7BBBBB01490.26BB01
144xus_T_DT7_DA8BBBBB00420.33BB00
154xus_T_DA8_DC9BB1BB03570.39BB03
164xus_T_DC9_DT10BBBBB00520.39BB00
174xus_T_DT10_DG11BBBBB00450.43BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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Color by conformation group (pyramids)

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Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N