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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Rhodobacter sphaeroides Argonaute in complex with guide RNA/target DNA heteroduplex

Results of the assignment of 68 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
015awh_C_U1_U2NANNANT00.85OP21
025awh_C_U2_A3AA1AA01800.27AA01
035awh_C_A3_C4AAAAA00840.24AA00
045awh_C_C4_A5AAAAA00880.15AA00
055awh_C_A5_A6AAAAA00910.18AA00
065awh_C_A6_C7AAAAA08800.19AA08
075awh_C_C7_C8AAAAA00870.17AA00
085awh_C_C8_U9AAAAA08830.21AA08
095awh_C_U9_A10AAAAA00810.22AA00
105awh_C_A10_C11AAAAA00820.14AA00
115awh_C_C11_U12NANNANT00.61AA10
125awh_C_U12_A13AA1AA01630.28AA01
135awh_C_A13_C14AAAAA00880.22AA00
145awh_C_C14_C15AAAAA00780.20AA00
155awh_C_C15_U16AAAAA00920.16AA00
165awh_C_U16_C17AAAAA00770.18AA00
175awh_C_C17_G18AAAAA00510.20AA00
185awh_D_DC1_DG2BBBBB00650.32BB00
195awh_D_DG2_DA3BBBBB00800.26BB00
205awh_D_DA3_DG4B-ABA05670.32BA05
215awh_D_DG4_DG5BBBBB01400.27BB01
225awh_D_DG5_DT6B-ABA01660.23BA01
235awh_D_DT6_DA7A-BAB01750.31AB01
245awh_D_DA7_DG8B-ABA17430.36BA17
255awh_D_DG8_DT9NANNANT00.49BB16
265awh_D_DT9_DA10BBBBB00730.17BB00
275awh_D_DA10_DG11BBBBB00730.26BB00
285awh_D_DG11_DG12BBBBB00290.33BB00
295awh_D_DG12_DT13BBBBB00320.33BB00
305awh_D_DT13_DT14BBBBB01920.13BB01
315awh_D_DT14_DG15BBBBB00520.19BB00
325awh_D_DG15_DT16BBBBB01750.13BB01
335awh_D_DT16_DA17BBBBB00520.24BB00
345awh_D_DA17_DA18NANNANT01.46OP16
355awh_E_U1_U2NANNANT00.87OP21
365awh_E_U2_A3AA1AA01810.28AA01
375awh_E_A3_C4AAAAA00870.24AA00
385awh_E_C4_A5AAAAA00870.16AA00
395awh_E_A5_A6AAAAA00780.26AA00
405awh_E_A6_C7AAAAA08880.23AA08
415awh_E_C7_C8AAAAA00750.17AA00
425awh_E_C8_U9AAAAA08860.20AA08
435awh_E_U9_A10AAAAA00930.15AA00
445awh_E_A10_C11AAAAA00870.18AA00
455awh_E_C11_U12NANNANT00.74AA11
465awh_E_U12_A13AA1AA10510.36AA10
475awh_E_A13_C14AAAAA00850.21AA00
485awh_E_C14_C15AAAAA00760.19AA00
495awh_E_C15_U16AAAAA00940.16AA00
505awh_E_U16_C17AAAAA00820.19AA00
515awh_E_C17_G18AAAAA00660.11AA00
525awh_F_DC1_DG2NANNANT00.36AB04
535awh_F_DG2_DA3BBBBB00760.23BB00
545awh_F_DA3_DG4BBBBB01670.32BB01
555awh_F_DG4_DG5BBBBB00520.23BB00
565awh_F_DG5_DT6B-ABA05880.19BA05
575awh_F_DT6_DA7A-BAB01510.34AB01
585awh_F_DA7_DG8NANNANT00.39BA17
595awh_F_DG8_DT9AAAAA00620.17AA00
605awh_F_DT9_DA10A-BAB01530.34AB01
615awh_F_DA10_DG11BBBBB00910.12BB00
625awh_F_DG11_DG12BBBBB00610.20BB00
635awh_F_DG12_DT13BBBBB00480.31BB00
645awh_F_DT13_DT14BBBBB00690.18BB00
655awh_F_DT14_DG15BBBBB00810.17BB00
665awh_F_DG15_DT16BBBBB01250.17BB01
675awh_F_DT16_DA17BBBBB00240.20BB00
685awh_F_DA17_DA18NANNANT01.50OP16

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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