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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of a topoisomerase II complex

Results of the assignment of 72 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
015btc_E_DT.A3_DC.A4miBBB15320.31BB15
025btc_E_DC.A4_DA.A5NANNANT00.46BA05
035btc_E_DA.A5_DT.A6AAAAA02600.34AA02
045btc_E_DT.A6_DG.A7NANNANT00.47IC06
055btc_E_DG.A7_DA.A8BB2BB08920.28BB08
065btc_E_DA.A8_DA.A9B-ABA10350.55BA10
075btc_E_DA.A9_DT.A10A-BAB01360.28AB01
085btc_E_DG.A11_DA.A12B12BB04680.20BB04
095btc_E_DA.A12_DC.A13BBBBB00920.12BB00
105btc_E_DC.A13_DT.A14B-ABA05350.38BA05
115btc_E_DT.A14_DA.A15NANNANT00.47AB04
125btc_E_DA.A15_DT.A16NANNANT00.47BA09
135btc_E_DT.A16_DG.A17A-BAB05740.27AB05
145btc_E_DG.A17_DC.A18B-ABA05210.56BA05
155btc_E_DC.A18_DA.A19A-BAB01310.35AB01
165btc_E_DA.A19_DC.A20BBBBB01890.15BB01
175btc_E_DC.A20_DG.A21BBBBB01180.39BB01
185btc_E_DG.A21_DT.A22NANNANT00.51AA04
195btc_F_DA.A3_DC.A4NANNANT00.39BA08
205btc_F_DC.A4_DG.A5AAAAA02280.33AA02
215btc_F_DG.A5_DT.A6AAAAA02550.38AA02
225btc_F_DT.A6_DG.A7NANNANT00.50IC06
235btc_F_DG.A7_DC.A8B12BB04880.16BB04
245btc_F_DC.A8_DA.A9B-ABA10610.39BA10
255btc_F_DA.A9_DT.A10AAAAA00440.21AA00
265btc_F_DA.A11_DG.A12B12BB04740.18BB04
275btc_F_DG.A12_DT.A13BBBBB00890.13BB00
285btc_F_DT.A13_DC.A14B-ABA05380.38BA05
295btc_F_DC.A14_DA.A15NANNANT00.49AB04
305btc_F_DA.A15_DT.A16NANNANT00.43BA09
315btc_F_DT.A16_DT.A17A-BAB05720.25AB05
325btc_F_DT.A17_DC.A18B-ABA05190.60BA05
335btc_F_DC.A18_DA.A19NANNANT00.35AB01
345btc_F_DA.A19_DT.A20BBBBB01740.18BB01
355btc_F_DT.A20_DG.A21B-ABA05380.30BA05
365btc_F_DG.A21_DA.A22NANNANT00.51AA04
375btc_G_DA.B3_DC.B4BBBBB01120.29BB01
385btc_G_DC.B4_DG.B5AAAAA02380.31AA02
395btc_G_DG.B5_DT.B6AAAAA02520.37AA02
405btc_G_DT.B6_DG.B7NANNANT00.43IC06
415btc_G_DG.B7_DC.B8BB1BB11270.41BB11
425btc_G_DC.B8_DA.B9B-ABA10700.47BA10
435btc_G_DA.B9_DT.B10AAAAA00450.19AA00
445btc_G_DA.B11_DG.B12B12BB04750.19BB04
455btc_G_DG.B12_DT.B13BBBBB00890.12BB00
465btc_G_DT.B13_DC.B14B-ABA0180.28BA01
475btc_G_DC.B14_DA.B15NANNANT00.50AB04
485btc_G_DA.B15_DT.B16NANNANT00.43BA09
495btc_G_DT.B16_DT.B17A-BAB05680.27AB05
505btc_G_DT.B17_DC.B18B-ABA05170.60BA05
515btc_G_DC.B18_DA.B19NANNANT00.36AB01
525btc_G_DA.B19_DT.B20BBBBB01760.18BB01
535btc_G_DT.B20_DG.B21B-ABA05330.31BA05
545btc_G_DG.B21_DA.B22NANNANT00.56AA04
555btc_H_DT.B3_DC.B4BBBBB00290.29BB00
565btc_H_DC.B4_DA.B5NANNANT00.47BA05
575btc_H_DA.B5_DT.B6AAAAA02670.31AA02
585btc_H_DT.B6_DG.B7NANNANT00.51IC06
595btc_H_DG.B7_DA.B8BB2BB07670.35BB07
605btc_H_DA.B8_DA.B9B-ABA10370.44BA10
615btc_H_DA.B9_DT.B10A-BAB01360.26AB01
625btc_H_DG.B11_DA.B12B12BB04680.20BB04
635btc_H_DA.B12_DC.B13BBBBB00910.14BB00
645btc_H_DC.B13_DT.B14B-ABA05310.38BA05
655btc_H_DT.B14_DA.B15NANNANT00.48AB04
665btc_H_DA.B15_DT.B16NANNANT00.45BA09
675btc_H_DT.B16_DG.B17A-BAB05650.29AB05
685btc_H_DG.B17_DC.B18B-ABA05250.54BA05
695btc_H_DC.B18_DA.B19A-BAB01270.37AB01
705btc_H_DA.B19_DC.B20BBBBB01910.15BB01
715btc_H_DC.B20_DG.B21B-ABA05230.32BA05
725btc_H_DG.B21_DT.B22NANNANT00.48AA04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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