Click the Table/Summary/Similar tabs for more details.
Center view on step or molecule.
Show reference model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
ASYMMETRIC DNA-BENDING IN THE CRE-LOXP SITE-SPECIFIC RECOMBINATION SYNAPSE

Results of the assignment of 64 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
015crx_C_DA2_DT3BBBBB00650.29BB00
025crx_C_DT3_DA4B12BB04650.27BB04
035crx_C_DA4_DA5BBBBB00780.34BB00
045crx_C_DA5_DC6NANNANT00.60BB02
055crx_C_DC6_DT7BBBBB00440.37BB00
065crx_C_DT7_DT8BBBBB00950.09BB00
075crx_C_DT8_DC9miBBB15850.26BB15
085crx_C_DC9_DG10BBBBB00770.18BB00
095crx_C_DG10_DT11BBBBB00650.32BB00
105crx_C_DT11_DA12BBBBB00710.15BB00
115crx_C_DA12_DT13BBBBB00820.26BB00
125crx_C_DT13_DA14B12BB04510.32BB04
135crx_C_DA14_DG15BBBBB00530.28BB00
145crx_C_DG15_DC16NANNANT00.37BB02
155crx_C_DC16_DA17NANNANT00.38BB13
165crx_C_DA17_DT18NANNANT00.64BB03
175crx_C_DT18_DA19NANNANT00.43AB03
185crx_C_DA19_DT20BB1BB02660.37BB02
195crx_C_DT20_DG21NANNANT00.94BB13
205crx_C_DG21_DC22NANNANT00.47BB00
215crx_C_DC22_DT23BBBBB00750.28BB00
225crx_C_DT23_DA24B12BB04770.27BB04
235crx_C_DA24_DT25BBBBB00720.22BB00
245crx_C_DT25_DA26BBBBB00860.15BB00
255crx_C_DA26_DC27BBBBB00770.30BB00
265crx_C_DC27_DG28B12BB04750.34BB04
275crx_C_DG28_DA29BBBBB00470.34BB00
285crx_C_DA29_DA30B12BB04750.19BB04
295crx_C_DA30_DG31BBBBB00730.18BB00
305crx_C_DG31_DT32BBBBB00640.29BB00
315crx_C_DT32_DT33BBBBB00800.20BB00
325crx_C_DT33_DA34B12BB04820.19BB04
335crx_D_DA2_DT3BBBBB00320.45BB00
345crx_D_DT3_DA4BB2BB07830.21BB07
355crx_D_DA4_DA5BBBBB00740.33BB00
365crx_D_DA5_DC6miBBB15700.45BB15
375crx_D_DC6_DT7B12BB04590.25BB04
385crx_D_DT7_DT8BBBBB00910.16BB00
395crx_D_DT8_DC9BB1BB02630.20BB02
405crx_D_DC9_DG10BBBBB00900.22BB00
415crx_D_DG10_DT11BBBBB00810.21BB00
425crx_D_DT11_DA12BBBBB00820.20BB00
435crx_D_DA12_DT13BBBBB00930.23BB00
445crx_D_DT13_DA14B12BB04780.19BB04
455crx_D_DA14_DG15BBBBB00650.21BB00
465crx_D_DG15_DC16miBBB10220.34BB10
475crx_D_DC16_DA17NANNANT00.71BB05
485crx_D_DA17_DT18BB1BB16390.47BB16
495crx_D_DT18_DA19NANNANT00.36BB11
505crx_D_DA19_DT20NANNANT01.11AB02
515crx_D_DT20_DG21NANNANT00.44BB16
525crx_D_DG21_DC22NANNANT00.64BB02
535crx_D_DC22_DT23BBBBB00690.40BB00
545crx_D_DT23_DA24BBBBB00650.25BB00
555crx_D_DA24_DT25B12BB04370.30BB04
565crx_D_DT25_DA26BBBBB00480.36BB00
575crx_D_DA26_DC27BBBBB00850.25BB00
585crx_D_DC27_DG28B12BB04820.18BB04
595crx_D_DG28_DA29B12BB04400.28BB04
605crx_D_DA29_DA30B12BB04800.21BB04
615crx_D_DA30_DG31BBBBB00820.15BB00
625crx_D_DG31_DT32BBBBB00620.30BB00
635crx_D_DT32_DT33BBBBB00840.20BB00
645crx_D_DT33_DA34BB2BB08380.39BB08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N