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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Human APE1 product complex

Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
015dff_D_DC2_DG3BB2BB07910.19BB07
025dff_D_DG3_DA4BBBBB00900.17BB00
035dff_D_DA4_DC5B-ABA05930.16BA05
045dff_D_DC5_DG6A-BAB03850.23AB03
055dff_D_DG6_DG7BBBBB00930.12BB00
065dff_D_DG7_DA8BBBBB00870.21BB00
075dff_D_DA8_DT9miBBB15520.23BB15
085dff_D_DT9_DC10BBBBB00570.13BB00
095dff_D_DC10_DC11NANNANT00.54BB08
105dff_P_DG1_DC2B-ABA05460.26BA05
115dff_P_DC2_DT3BBBBB01450.29BB01
125dff_P_DT3_DG4BBBBB00400.27BB00
135dff_P_DG4_DA5B12BB04720.17BB04
145dff_P_DA5_DT6BBBBB00820.12BB00
155dff_P_DT6_DG7BBBBB00840.16BB00
165dff_P_DG7_DC8BBBBB01860.16BB01
175dff_P_DC8_DG9BBBBB01740.22BB01
185dff_P_DG9_DC10BBBBB00740.23BB00
195dff_V_DG1_DG2BB2BB07940.29BB07
205dff_V_DG2_DA3BBBBB00930.14BB00
215dff_V_DA3_DT4BBBBB01770.22BB01
225dff_V_DT4_DC5BBBBB00430.21BB00
235dff_V_DC5_DC6BBBBB00640.21BB00
245dff_V_DC6_DG7BBBBB00550.37BB00
255dff_V_DG7_DT8BBBBB00940.18BB00
265dff_V_DT8_DC9BBBBB01720.14BB01
275dff_V_DC9_DG10BBBBB00520.43BB00
285dff_V_DG10_DG11NANNANT00.47BA08
295dff_V_DG11_DG12NANNANT00.98BB00
305dff_V_DG12_DC13NANNANT00.44BA10
315dff_V_DC13_DG14A-BAB05440.19AB05
325dff_V_DG14_DC15BBBBB00900.17BB00
335dff_V_DC15_DA16BBBBB00800.32BB00
345dff_V_DA16_DT17BBBBB01960.14BB01
355dff_V_DT17_DC18BBBBB01800.12BB01
365dff_V_DC18_DA19BBBBB00800.23BB00
375dff_V_DA19_DG20B-ABA05840.19BA05
385dff_V_DG20_DC21BBBBB01560.22BB01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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