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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Transcription factor GRDBD and GRE complex

Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
015emq_C_DC1_DC2BBBBB00400.18BB00
025emq_C_DC2_DA3BBBBB00520.35BB00
035emq_C_DA3_DG4BBBBB00700.26BB00
045emq_C_DG4_DA5BBBBB00750.29BB00
055emq_C_DA5_DA6NANNANT00.55AB03
065emq_C_DA6_DC7A-BAB02520.30AB02
075emq_C_DC7_DA8BB1BB03530.44BB03
085emq_C_DA8_DT9BBBBB01440.42BB01
095emq_C_DT9_DG10NANNANT00.28BB01
105emq_C_DG10_DA11NANNANT00.52BB14
115emq_C_DA11_DT12B-ABA05770.21BA05
125emq_C_DT12_DG13A-BAB03520.28AB03
135emq_C_DG13_DT14B12BB04920.24BB04
145emq_C_DT14_DT15BBBBB00880.14BB00
155emq_C_DT15_DC16BBBBB00850.20BB00
165emq_C_DC16_DT17BBBBB00910.18BB00
175emq_C_DT17_DG18BBBBB00910.16BB00
185emq_D_DC2_DC3BBBBB00760.18BB00
195emq_D_DC3_DA4B12BB04710.25BB04
205emq_D_DA4_DG5BBBBB00840.20BB00
215emq_D_DG5_DA6BBBBB00820.28BB00
225emq_D_DA6_DA7BBBBB00580.18BB00
235emq_D_DA7_DC8BBBBB01770.17BB01
245emq_D_DC8_DA9BBBBB00460.16BB00
255emq_D_DA9_DT10BBBBB00940.16BB00
265emq_D_DT10_DC11B-ABA09180.34BA09
275emq_D_DC11_DA12NANNANT00.55AB03
285emq_D_DA12_DT13BBBBB01750.24BB01
295emq_D_DT13_DG14BBBBB00450.20BB00
305emq_D_DG14_DT15B12BB04870.27BB04
315emq_D_DT15_DT16BBBBB00880.14BB00
325emq_D_DT16_DC17BBBBB00740.20BB00
335emq_D_DC17_DT18BBBBB00920.17BB00
345emq_D_DT18_DG19BB1BB02640.28BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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