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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Enterovirus 71 Polymerase Elongation Complex (C1S2/3 Form)

Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
015f8i_B_G599_G600NANNANT00.58OP06
025f8i_B_G600_U601AAAAA00850.21AA00
035f8i_B_U601_C602AAwAA01270.35AA01
045f8i_B_C602_U603AAAAA00880.10AA00
055f8i_B_U603_C604AAAAA00910.09AA00
065f8i_B_C604_U605AAAAA00860.13AA00
075f8i_B_U605_C606AAAAA00640.18AA00
085f8i_B_C606_U607AAAAA00820.10AA00
095f8i_B_U607_C608AAAAA08740.18AA08
105f8i_B_C608_G609AAwAA06830.14AA06
115f8i_B_G609_U610AAAAA08310.31AA08
125f8i_C_A692_C693AAAAA00850.12AA00
135f8i_C_C693_G694AAwAA06300.31AA06
145f8i_C_G694_A695AAAAA08510.24AA08
155f8i_C_A695_G696AAAAA08750.18AA08
165f8i_C_G696_A697AAAAA00680.23AA00
175f8i_C_A697_G698AAAAA00820.12AA00
185f8i_C_G698_A699AAAAA08720.24AA08
195f8i_C_A699_G700AAAAA00920.09AA00
205f8i_C_G700_A701AAAAA00620.20AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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