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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Cocrystal structure of an anti-parallel DNA G-quadruplex and a tetra-Quinoline Foldamer

Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
015hix_A_DG1_DG2SYNBBS1600.29BBS1
025hix_A_DG2_DG3SYNBB2S120.18BB2S
035hix_A_DG3_DG4SYNBBS1670.25BBS1
045hix_A_DG4_DT5B-ABA10470.40BA10
055hix_A_DT5_DT6NANNANT00.48BB03
065hix_A_DT6_DT7NANNANT00.37BB20
075hix_A_DT7_DT8NANNANT00.93IC03
085hix_A_DT8_DG9NANNANT00.34OP1S
095hix_A_DG9_DG10SYNBBS1560.26BBS1
105hix_A_DG10_DG11NANNANT00.29BB2S
115hix_A_DG11_DG12SYNBBS1280.33BBS1
125hix_B_DG1_DG2SYNBBS1610.27BBS1
135hix_B_DG2_DG3SYNBB2S420.21BB2S
145hix_B_DG3_DG4SYNBBS1390.29BBS1
155hix_B_DG4_DT5B-ABA10410.45BA10
165hix_B_DT5_DT6NANNANT00.61IC04
175hix_B_DT6_DT7NANNANT00.38BB20
185hix_B_DT7_DT8NANNANT00.49IC06
195hix_B_DT8_DG9NANNANT00.28OP1S
205hix_B_DG9_DG10SYNBBS1170.58BBS1
215hix_B_DG10_DG11NANNANT00.47BB2S
225hix_B_DG11_DG12SYNBBS1820.21BBS1

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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