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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of the pre-catalytic ternary extension complex of DNA polymerase lambda with an 8-oxo-dG:dA base-pair

Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
015iim_D_DG1_DC2A-BAB05410.22AB05
025iim_D_DC2_DC3BBBBB00840.27BB00
035iim_D_DC3_DG4BB2BB07710.37BB07
045iim_P_DC1_DA2A-BAB01640.26AB01
055iim_P_DA2_DG3BBBBB01840.18BB01
065iim_P_DG3_DT4B-ABA05820.15BA05
075iim_P_DT4_DA5B-ABA05660.18BA05
085iim_P_DA5_DA6A-BAB01110.21AB01
095iim_T_DC1_DG2BBBBB00740.44BB00
105iim_T_DG2_DG3BB2BB07790.28BB07
115iim_T_DG3_DC4B-ABA05720.26BA05
125iim_T_DC4_DA5NANNANT01.27OP21
135iim_T_DA5_8OG6NANNANT00.76AB1S
145iim_T_8OG6_DT7NANNANT00.59AA01
155iim_T_DT7_DA8A-BAB05210.22AB05
165iim_T_DA8_DC9BB1BB03840.35BB03
175iim_T_DC9_DT10BBBBB00340.38BB00
185iim_T_DT10_DG11BBBBB00550.44BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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