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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
A two-quartet G-quadruplex formed by human telomere in KCl solution at neutral pH

Results of the assignment of 210 detected steps in 10 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
0015lqg-m10_A_DT1_DA2NANNANT00.46IC05
0025lqg-m1_A_DT1_DA2NANNANT00.43IC05
0035lqg-m2_A_DT1_DA2NANNANT01.26IC06
0045lqg-m3_A_DT1_DA2NANNANT00.75BB02
0055lqg-m4_A_DT1_DA2NANNANT01.42IC03
0065lqg-m5_A_DT1_DA2BBBBB00250.34BB00
0075lqg-m6_A_DT1_DA2NANNANT01.25IC06
0085lqg-m7_A_DT1_DA2NANNANT00.89BB16
0095lqg-m8_A_DT1_DA2NANNANT01.62ZZ01
0105lqg-m9_A_DT1_DA2ICLIC06200.79IC06
0115lqg-m10_A_DA2_DG3NANNANT01.58ZZ1S
0125lqg-m1_A_DA2_DG3NANNANT01.02AB1S
0135lqg-m2_A_DA2_DG3NANNANT01.70ZZ1S
0145lqg-m3_A_DA2_DG3NANNANT00.71OP15
0155lqg-m4_A_DA2_DG3NANNANT01.68ZZ1S
0165lqg-m5_A_DA2_DG3NANNANT01.07AB1S
0175lqg-m6_A_DA2_DG3NANNANT00.77OP15
0185lqg-m7_A_DA2_DG3NANNANT01.65ZZ1S
0195lqg-m8_A_DA2_DG3NANNANT01.64ZZ1S
0205lqg-m9_A_DA2_DG3NANNANT00.71OP10
0215lqg-m10_A_DG3_DG4SYNBBS1910.34BBS1
0225lqg-m1_A_DG3_DG4SYNBBS1820.36BBS1
0235lqg-m2_A_DG3_DG4SYNBBS1930.28BBS1
0245lqg-m3_A_DG3_DG4SYNBBS1880.32BBS1
0255lqg-m4_A_DG3_DG4SYNBBS1910.30BBS1
0265lqg-m5_A_DG3_DG4SYNBBS1880.32BBS1
0275lqg-m6_A_DG3_DG4SYNBBS1900.30BBS1
0285lqg-m7_A_DG3_DG4SYNBBS1880.36BBS1
0295lqg-m8_A_DG3_DG4SYNBBS1950.27BBS1
0305lqg-m9_A_DG3_DG4SYNBBS1820.32BBS1
0315lqg-m10_A_DG4_DG5BBBBB00580.52BB00
0325lqg-m1_A_DG4_DG5BB1BB03500.24BB03
0335lqg-m2_A_DG4_DG5BBBBB00630.54BB00
0345lqg-m3_A_DG4_DG5BBBBB00650.51BB00
0355lqg-m4_A_DG4_DG5BBBBB01490.40BB01
0365lqg-m5_A_DG4_DG5BBBBB01570.37BB01
0375lqg-m6_A_DG4_DG5BBBBB00620.52BB00
0385lqg-m7_A_DG4_DG5BBBBB00660.49BB00
0395lqg-m8_A_DG4_DG5BBBBB00470.56BB00
0405lqg-m9_A_DG4_DG5BBBBB01560.37BB01
0415lqg-m10_A_DG5_DT6NANNANT01.02BB00
0425lqg-m1_A_DG5_DT6NANNANT01.02BA08
0435lqg-m2_A_DG5_DT6NANNANT00.98BB00
0445lqg-m3_A_DG5_DT6NANNANT00.85BB00
0455lqg-m4_A_DG5_DT6NANNANT00.92BB00
0465lqg-m5_A_DG5_DT6NANNANT00.91BA08
0475lqg-m6_A_DG5_DT6NANNANT01.26OP12
0485lqg-m7_A_DG5_DT6NANNANT01.04BB00
0495lqg-m8_A_DG5_DT6NANNANT01.06BB00
0505lqg-m9_A_DG5_DT6NANNANT00.99BB00
0515lqg-m10_A_DT6_DT7NANNANT00.59OP10
0525lqg-m1_A_DT6_DT7NANNANT01.47BB05
0535lqg-m2_A_DT6_DT7NANNANT01.24OP16
0545lqg-m3_A_DT6_DT7NANNANT01.59OP1S
0555lqg-m4_A_DT6_DT7NANNANT00.49OP10
0565lqg-m5_A_DT6_DT7NANNANT01.71BB02
0575lqg-m6_A_DT6_DT7NANNANT01.40OP16
0585lqg-m7_A_DT6_DT7NANNANT01.36OP15
0595lqg-m8_A_DT6_DT7NANNANT00.85OP10
0605lqg-m9_A_DT6_DT7NANNANT01.39OP15
0615lqg-m10_A_DT7_DA8NANNANT01.00BB20
0625lqg-m1_A_DT7_DA8NANNANT01.14AA07
0635lqg-m2_A_DT7_DA8NANNANT01.05AA07
0645lqg-m3_A_DT7_DA8NANNANT01.17AA07
0655lqg-m4_A_DT7_DA8NANNANT00.94OP15
0665lqg-m5_A_DT7_DA8NANNANT01.21AA12
0675lqg-m6_A_DT7_DA8NANNANT00.75AA07
0685lqg-m7_A_DT7_DA8NANNANT01.14AA07
0695lqg-m8_A_DT7_DA8NANNANT00.96OP15
0705lqg-m9_A_DT7_DA8NANNANT01.22AA04
0715lqg-m10_A_DA8_DG9NANNANT01.89AB2S
0725lqg-m1_A_DA8_DG9ZZZZZ2S170.23ZZ2S
0735lqg-m2_A_DA8_DG9NANNANT01.55OP10
0745lqg-m3_A_DA8_DG9ZZZZZ2S140.21ZZ2S
0755lqg-m4_A_DA8_DG9NANNANT01.17ZZ2S
0765lqg-m5_A_DA8_DG9NANNANT00.28ZZ2S
0775lqg-m6_A_DA8_DG9NANNANT01.90AB2S
0785lqg-m7_A_DA8_DG9ZZZZZ2S110.23ZZ2S
0795lqg-m8_A_DA8_DG9NANNANT01.26OP10
0805lqg-m9_A_DA8_DG9NANNANT00.24ZZ2S
0815lqg-m10_A_DG9_DG10NANNANT00.54AA01
0825lqg-m1_A_DG9_DG10SYNBBS1680.33BBS1
0835lqg-m2_A_DG9_DG10SYNBBS1370.49BBS1
0845lqg-m3_A_DG9_DG10SYNBBS1710.34BBS1
0855lqg-m4_A_DG9_DG10NANNANT00.61BA10
0865lqg-m5_A_DG9_DG10NANNANT00.38BB03
0875lqg-m6_A_DG9_DG10SYNBBS1690.29BBS1
0885lqg-m7_A_DG9_DG10SYNBBS1670.34BBS1
0895lqg-m8_A_DG9_DG10SYNBBS1640.31BBS1
0905lqg-m9_A_DG9_DG10NANNANT00.47BB12
0915lqg-m10_A_DG10_DG11NANNANT01.11BB2S
0925lqg-m1_A_DG10_DG11NANNANT00.99BB2S
0935lqg-m2_A_DG10_DG11NANNANT00.96BB2S
0945lqg-m3_A_DG10_DG11NANNANT00.96BB2S
0955lqg-m4_A_DG10_DG11NANNANT01.07BB2S
0965lqg-m5_A_DG10_DG11NANNANT01.12BB2S
0975lqg-m6_A_DG10_DG11NANNANT00.84BA09
0985lqg-m7_A_DG10_DG11NANNANT00.99BB2S
0995lqg-m8_A_DG10_DG11NANNANT00.97BB2S
1005lqg-m9_A_DG10_DG11NANNANT01.19BB2S
1015lqg-m10_A_DG11_DT12NANNANT01.25ZZS1
1025lqg-m1_A_DG11_DT12NANNANT01.20ZZS1
1035lqg-m2_A_DG11_DT12NANNANT01.23ZZS1
1045lqg-m3_A_DG11_DT12NANNANT01.17ZZS1
1055lqg-m4_A_DG11_DT12NANNANT01.24ZZS1
1065lqg-m5_A_DG11_DT12NANNANT01.22ZZS1
1075lqg-m6_A_DG11_DT12NANNANT01.09ZZS1
1085lqg-m7_A_DG11_DT12NANNANT01.18ZZS1
1095lqg-m8_A_DG11_DT12NANNANT01.20ZZS1
1105lqg-m9_A_DG11_DT12NANNANT01.19ZZS1
1115lqg-m10_A_DT12_DT13BBBBB00630.35BB00
1125lqg-m1_A_DT12_DT13BB1BB03840.20BB03
1135lqg-m2_A_DT12_DT13BBBBB01560.37BB01
1145lqg-m3_A_DT12_DT13BBBBB00710.33BB00
1155lqg-m4_A_DT12_DT13BBBBB01620.33BB01
1165lqg-m5_A_DT12_DT13BB1BB03870.20BB03
1175lqg-m6_A_DT12_DT13BBBBB01630.21BB01
1185lqg-m7_A_DT12_DT13BBBBB01780.32BB01
1195lqg-m8_A_DT12_DT13BBBBB00550.28BB00
1205lqg-m9_A_DT12_DT13BBBBB00550.27BB00
1215lqg-m10_A_DT13_DA14BBBBB00690.29BB00
1225lqg-m1_A_DT13_DA14BBBBB00590.50BB00
1235lqg-m2_A_DT13_DA14BB1BB03440.29BB03
1245lqg-m3_A_DT13_DA14BBBBB01670.32BB01
1255lqg-m4_A_DT13_DA14BBBBB00660.34BB00
1265lqg-m5_A_DT13_DA14BBBBB00500.57BB00
1275lqg-m6_A_DT13_DA14BBBBB00630.31BB00
1285lqg-m7_A_DT13_DA14BB1BB03490.30BB03
1295lqg-m8_A_DT13_DA14BB1BB03430.30BB03
1305lqg-m9_A_DT13_DA14BBBBB00670.33BB00
1315lqg-m10_A_DA14_DG15NANNANT00.63BB00
1325lqg-m1_A_DA14_DG15NANNANT00.53AB03
1335lqg-m2_A_DA14_DG15NANNANT00.56BB00
1345lqg-m3_A_DA14_DG15NANNANT00.56BB00
1355lqg-m4_A_DA14_DG15NANNANT00.53AB03
1365lqg-m5_A_DA14_DG15NANNANT00.55BB00
1375lqg-m6_A_DA14_DG15NANNANT00.56BB00
1385lqg-m7_A_DA14_DG15NANNANT00.64BB00
1395lqg-m8_A_DA14_DG15NANNANT00.65BB00
1405lqg-m9_A_DA14_DG15NANNANT00.56BB00
1415lqg-m10_A_DG15_DG16NANNANT00.65OP10
1425lqg-m1_A_DG15_DG16NANNANT00.64OP10
1435lqg-m2_A_DG15_DG16NANNANT01.55ZZ1S
1445lqg-m3_A_DG15_DG16NANNANT01.53ZZ1S
1455lqg-m4_A_DG15_DG16NANNANT00.64OP10
1465lqg-m5_A_DG15_DG16NANNANT00.62OP10
1475lqg-m6_A_DG15_DG16NANNANT00.63OP10
1485lqg-m7_A_DG15_DG16NANNANT01.52ZZ1S
1495lqg-m8_A_DG15_DG16NANNANT00.66OP10
1505lqg-m9_A_DG15_DG16NANNANT01.55ZZ1S
1515lqg-m10_A_DG16_DG17SYNBBS1850.27BBS1
1525lqg-m1_A_DG16_DG17SYNBBS1890.27BBS1
1535lqg-m2_A_DG16_DG17SYNBBS1850.24BBS1
1545lqg-m3_A_DG16_DG17SYNBBS1900.26BBS1
1555lqg-m4_A_DG16_DG17SYNBBS1860.24BBS1
1565lqg-m5_A_DG16_DG17SYNBBS1890.27BBS1
1575lqg-m6_A_DG16_DG17SYNBBS1840.26BBS1
1585lqg-m7_A_DG16_DG17SYNBBS1870.25BBS1
1595lqg-m8_A_DG16_DG17SYNBBS1850.26BBS1
1605lqg-m9_A_DG16_DG17SYNBBS1930.24BBS1
1615lqg-m10_A_DG17_DT18NANNANT01.94IC04
1625lqg-m1_A_DG17_DT18NANNANT01.47IC03
1635lqg-m2_A_DG17_DT18NANNANT01.46IC03
1645lqg-m3_A_DG17_DT18NANNANT01.48IC03
1655lqg-m4_A_DG17_DT18NANNANT01.48IC03
1665lqg-m5_A_DG17_DT18NANNANT01.49IC03
1675lqg-m6_A_DG17_DT18NANNANT01.43IC01
1685lqg-m7_A_DG17_DT18NANNANT01.40IC01
1695lqg-m8_A_DG17_DT18NANNANT01.50IC01
1705lqg-m9_A_DG17_DT18NANNANT01.47IC01
1715lqg-m10_A_DT18_DT19NANNANT01.39ZZ01
1725lqg-m1_A_DT18_DT19NANNANT01.31OP20
1735lqg-m2_A_DT18_DT19NANNANT00.62OP12
1745lqg-m3_A_DT18_DT19NANNANT00.65OP12
1755lqg-m4_A_DT18_DT19NANNANT01.22OP20
1765lqg-m5_A_DT18_DT19NANNANT01.21OP20
1775lqg-m6_A_DT18_DT19NANNANT00.62OP12
1785lqg-m7_A_DT18_DT19NANNANT00.68OP12
1795lqg-m8_A_DT18_DT19NANNANT00.62OP12
1805lqg-m9_A_DT18_DT19NANNANT00.55OP12
1815lqg-m10_A_DT19_DA20BB1BB16230.59BB16
1825lqg-m1_A_DT19_DA20BB1BB16120.65BB16
1835lqg-m2_A_DT19_DA20BB1BB16200.62BB16
1845lqg-m3_A_DT19_DA20BB1BB16270.55BB16
1855lqg-m4_A_DT19_DA20BB1BB16150.57BB16
1865lqg-m5_A_DT19_DA20BB1BB16130.64BB16
1875lqg-m6_A_DT19_DA20BB1BB16110.56BB16
1885lqg-m7_A_DT19_DA20BB1BB16230.51BB16
1895lqg-m8_A_DT19_DA20BB1BB16290.45BB16
1905lqg-m9_A_DT19_DA20BB1BB16190.57BB16
1915lqg-m10_A_DA20_DG21NANNANT01.02BB1S
1925lqg-m1_A_DA20_DG21NANNANT00.95BB1S
1935lqg-m2_A_DA20_DG21NANNANT00.99BB1S
1945lqg-m3_A_DA20_DG21NANNANT01.03BB1S
1955lqg-m4_A_DA20_DG21NANNANT00.98BB1S
1965lqg-m5_A_DA20_DG21NANNANT00.95BB1S
1975lqg-m6_A_DA20_DG21NANNANT00.94BB1S
1985lqg-m7_A_DA20_DG21NANNANT01.02BB1S
1995lqg-m8_A_DA20_DG21NANNANT01.29ZZ2S
2005lqg-m9_A_DA20_DG21NANNANT00.96BB1S
2015lqg-m10_A_DG21_DG22NANNANT00.39BB12
2025lqg-m1_A_DG21_DG22SYNBBS1730.34BBS1
2035lqg-m2_A_DG21_DG22SYNBBS1910.29BBS1
2045lqg-m3_A_DG21_DG22NANNANT00.43BB03
2055lqg-m4_A_DG21_DG22SYNBBS1880.30BBS1
2065lqg-m5_A_DG21_DG22SYNBBS1860.31BBS1
2075lqg-m6_A_DG21_DG22NANNANT00.39BB03
2085lqg-m7_A_DG21_DG22SYNBBS1830.33BBS1
2095lqg-m8_A_DG21_DG22NANNANT00.44BB03
2105lqg-m9_A_DG21_DG22SYNBBS1920.28BBS1

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show



Color by conformation group (pyramids)

group
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Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N