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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
A two-quartet G-quadruplex formed by human telomere in KCl solution at pH 5.0

Results of the assignment of 210 detected steps in 10 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
0015lqh-m10_A_DT1_DA2NANNANT01.34IC02
0025lqh-m1_A_DT1_DA2NANNANT01.05OP20
0035lqh-m2_A_DT1_DA2NANNANT01.36IC02
0045lqh-m3_A_DT1_DA2NANNANT01.28IC03
0055lqh-m4_A_DT1_DA2NANNANT01.28IC02
0065lqh-m5_A_DT1_DA2NANNANT01.55OP20
0075lqh-m6_A_DT1_DA2NANNANT01.71OP20
0085lqh-m7_A_DT1_DA2NANNANT01.36IC02
0095lqh-m8_A_DT1_DA2NANNANT01.29IC03
0105lqh-m9_A_DT1_DA2NANNANT01.75OP20
0115lqh-m10_A_DA2_DG3NANNANT02.03ZZ1S
0125lqh-m1_A_DA2_DG3NANNANT01.93ZZ2S
0135lqh-m2_A_DA2_DG3NANNANT01.98ZZ1S
0145lqh-m3_A_DA2_DG3NANNANT00.99BB1S
0155lqh-m4_A_DA2_DG3NANNANT02.01ZZ1S
0165lqh-m5_A_DA2_DG3NANNANT00.75AB1S
0175lqh-m6_A_DA2_DG3NANNANT02.05ZZ1S
0185lqh-m7_A_DA2_DG3NANNANT00.76AB1S
0195lqh-m8_A_DA2_DG3NANNANT00.80BB2S
0205lqh-m9_A_DA2_DG3NANNANT01.86ZZ2S
0215lqh-m10_A_DG3_DG4SYNBBS1750.45BBS1
0225lqh-m1_A_DG3_DG4SYNBBS1740.48BBS1
0235lqh-m2_A_DG3_DG4SYNBBS1720.49BBS1
0245lqh-m3_A_DG3_DG4NANNANT00.75BBS1
0255lqh-m4_A_DG3_DG4SYNBBS1750.48BBS1
0265lqh-m5_A_DG3_DG4SYNBBS1550.54BBS1
0275lqh-m6_A_DG3_DG4SYNBBS1740.50BBS1
0285lqh-m7_A_DG3_DG4SYNBBS1540.56BBS1
0295lqh-m8_A_DG3_DG4SYNBBS1740.41BBS1
0305lqh-m9_A_DG3_DG4SYNBBS1740.49BBS1
0315lqh-m10_A_DG4_DG5NANNANT00.68AB1S
0325lqh-m1_A_DG4_DG5NANNANT00.87BA10
0335lqh-m2_A_DG4_DG5NANNANT00.89BA10
0345lqh-m3_A_DG4_DG5NANNANT01.00AA01
0355lqh-m4_A_DG4_DG5NANNANT00.78BA10
0365lqh-m5_A_DG4_DG5NANNANT00.86BA10
0375lqh-m6_A_DG4_DG5NANNANT00.83BA10
0385lqh-m7_A_DG4_DG5NANNANT00.83BA10
0395lqh-m8_A_DG4_DG5NANNANT00.85BB2S
0405lqh-m9_A_DG4_DG5NANNANT00.92BA10
0415lqh-m10_A_DG5_DT6NANNANT00.90IC03
0425lqh-m1_A_DG5_DT6NANNANT01.09OPS1
0435lqh-m2_A_DG5_DT6NANNANT00.57IC04
0445lqh-m3_A_DG5_DT6NANNANT01.08OPS1
0455lqh-m4_A_DG5_DT6NANNANT00.96OPS1
0465lqh-m5_A_DG5_DT6NANNANT01.05OPS1
0475lqh-m6_A_DG5_DT6NANNANT01.05OPS1
0485lqh-m7_A_DG5_DT6NANNANT01.09OPS1
0495lqh-m8_A_DG5_DT6NANNANT01.06OPS1
0505lqh-m9_A_DG5_DT6NANNANT01.08OPS1
0515lqh-m10_A_DT6_DT7NANNANT01.77OP02
0525lqh-m1_A_DT6_DT7NANNANT01.81OP10
0535lqh-m2_A_DT6_DT7NANNANT00.95OP18
0545lqh-m3_A_DT6_DT7NANNANT01.81OP02
0555lqh-m4_A_DT6_DT7NANNANT00.78OP18
0565lqh-m5_A_DT6_DT7NANNANT00.91OP18
0575lqh-m6_A_DT6_DT7NANNANT00.75OP18
0585lqh-m7_A_DT6_DT7NANNANT01.52OP15
0595lqh-m8_A_DT6_DT7NANNANT01.77OP07
0605lqh-m9_A_DT6_DT7NANNANT01.02OP18
0615lqh-m10_A_DT7_DA8BB1BB16670.38BB16
0625lqh-m1_A_DT7_DA8BB1BB16820.36BB16
0635lqh-m2_A_DT7_DA8NANNANT00.98BB03
0645lqh-m3_A_DT7_DA8BB1BB16720.34BB16
0655lqh-m4_A_DT7_DA8BB1BB16770.21BB16
0665lqh-m5_A_DT7_DA8BB1BB16510.30BB16
0675lqh-m6_A_DT7_DA8BB1BB16720.30BB16
0685lqh-m7_A_DT7_DA8BB1BB16740.33BB16
0695lqh-m8_A_DT7_DA8BB1BB16570.39BB16
0705lqh-m9_A_DT7_DA8NANNANT00.89BB03
0715lqh-m10_A_DA8_DG9NANNANT01.15BB2S
0725lqh-m1_A_DA8_DG9NANNANT01.32BB2S
0735lqh-m2_A_DA8_DG9NANNANT01.55ZZ2S
0745lqh-m3_A_DA8_DG9NANNANT01.08BB1S
0755lqh-m4_A_DA8_DG9NANNANT00.83OP08
0765lqh-m5_A_DA8_DG9NANNANT01.35BB2S
0775lqh-m6_A_DA8_DG9NANNANT01.25BB1S
0785lqh-m7_A_DA8_DG9NANNANT01.24BB2S
0795lqh-m8_A_DA8_DG9NANNANT01.81ZZ1S
0805lqh-m9_A_DA8_DG9NANNANT01.24BB2S
0815lqh-m10_A_DG9_DG10SYNBBS1880.26BBS1
0825lqh-m1_A_DG9_DG10SYNBBS1780.27BBS1
0835lqh-m2_A_DG9_DG10SYNBBS1910.17BBS1
0845lqh-m3_A_DG9_DG10SYNBBS1850.25BBS1
0855lqh-m4_A_DG9_DG10SYNBBS1890.21BBS1
0865lqh-m5_A_DG9_DG10NANNANT00.45BB03
0875lqh-m6_A_DG9_DG10SYNBBS1790.27BBS1
0885lqh-m7_A_DG9_DG10SYNBBS1780.24BBS1
0895lqh-m8_A_DG9_DG10SYNBBS1230.45BBS1
0905lqh-m9_A_DG9_DG10SYNBBS1830.27BBS1
0915lqh-m10_A_DG10_DG11BB2BB08700.59BB08
0925lqh-m1_A_DG10_DG11BBBBB00600.36BB00
0935lqh-m2_A_DG10_DG11BBBBB00570.46BB00
0945lqh-m3_A_DG10_DG11BBBBB00630.33BB00
0955lqh-m4_A_DG10_DG11BB2BB08630.61BB08
0965lqh-m5_A_DG10_DG11BBBBB00590.50BB00
0975lqh-m6_A_DG10_DG11BBBBB00610.41BB00
0985lqh-m7_A_DG10_DG11NANNANT00.66BB13
0995lqh-m8_A_DG10_DG11BBBBB00600.40BB00
1005lqh-m9_A_DG10_DG11BBBBB00560.41BB00
1015lqh-m10_A_DG11_DT12NANNANT01.21OP09
1025lqh-m1_A_DG11_DT12NANNANT01.54BB00
1035lqh-m2_A_DG11_DT12NANNANT01.50BB00
1045lqh-m3_A_DG11_DT12NANNANT01.18OP09
1055lqh-m4_A_DG11_DT12NANNANT01.19OP09
1065lqh-m5_A_DG11_DT12NANNANT01.25OP09
1075lqh-m6_A_DG11_DT12NANNANT01.14OP09
1085lqh-m7_A_DG11_DT12NANNANT01.27OP09
1095lqh-m8_A_DG11_DT12NANNANT01.15OP09
1105lqh-m9_A_DG11_DT12NANNANT00.85OP04
1115lqh-m10_A_DT12_DT13NANNANT01.26OP14
1125lqh-m1_A_DT12_DT13NANNANT02.04OP17
1135lqh-m2_A_DT12_DT13NANNANT01.91OP19
1145lqh-m3_A_DT12_DT13NANNANT00.96OP13
1155lqh-m4_A_DT12_DT13NANNANT01.14OP14
1165lqh-m5_A_DT12_DT13NANNANT01.36OP17
1175lqh-m6_A_DT12_DT13NANNANT01.42OP17
1185lqh-m7_A_DT12_DT13NANNANT01.26OP14
1195lqh-m8_A_DT12_DT13NANNANT00.67OP13
1205lqh-m9_A_DT12_DT13NANNANT02.21OP16
1215lqh-m10_A_DT13_DA14NANNANT00.58IC06
1225lqh-m1_A_DT13_DA14NANNANT00.67IC06
1235lqh-m2_A_DT13_DA14NANNANT01.21BB03
1245lqh-m3_A_DT13_DA14NANNANT02.14IC05
1255lqh-m4_A_DT13_DA14NANNANT00.69OP20
1265lqh-m5_A_DT13_DA14NANNANT02.18IC05
1275lqh-m6_A_DT13_DA14NANNANT01.69OP09
1285lqh-m7_A_DT13_DA14NANNANT01.71AB02
1295lqh-m8_A_DT13_DA14NANNANT01.23OP19
1305lqh-m9_A_DT13_DA14NANNANT02.04IC05
1315lqh-m10_A_DA14_DG15NANNANT00.66BB00
1325lqh-m1_A_DA14_DG15NANNANT00.77BB03
1335lqh-m2_A_DA14_DG15NANNANT00.85BB02
1345lqh-m3_A_DA14_DG15NANNANT00.76BB13
1355lqh-m4_A_DA14_DG15NANNANT00.86BB02
1365lqh-m5_A_DA14_DG15NANNANT00.68BB00
1375lqh-m6_A_DA14_DG15NANNANT00.66BB00
1385lqh-m7_A_DA14_DG15NANNANT00.86IC05
1395lqh-m8_A_DA14_DG15NANNANT00.60IC06
1405lqh-m9_A_DA14_DG15NANNANT00.67BB00
1415lqh-m10_A_DG15_DG16NANNANT00.72BB2S
1425lqh-m1_A_DG15_DG16NANNANT00.78AB1S
1435lqh-m2_A_DG15_DG16NANNANT00.51BB2S
1445lqh-m3_A_DG15_DG16SYNBB2S190.45BB2S
1455lqh-m4_A_DG15_DG16NANNANT00.65BB2S
1465lqh-m5_A_DG15_DG16NANNANT00.48BB2S
1475lqh-m6_A_DG15_DG16NANNANT00.65BB2S
1485lqh-m7_A_DG15_DG16NANNANT00.73BB2S
1495lqh-m8_A_DG15_DG16NANNANT00.52BB2S
1505lqh-m9_A_DG15_DG16NANNANT00.64BB2S
1515lqh-m10_A_DG16_DG17SYNBBS1790.27BBS1
1525lqh-m1_A_DG16_DG17SYNBBS1690.27BBS1
1535lqh-m2_A_DG16_DG17SYNBBS1780.26BBS1
1545lqh-m3_A_DG16_DG17SYNBBS1790.19BBS1
1555lqh-m4_A_DG16_DG17SYNBBS1720.32BBS1
1565lqh-m5_A_DG16_DG17SYNBBS1820.21BBS1
1575lqh-m6_A_DG16_DG17SYNBBS1800.27BBS1
1585lqh-m7_A_DG16_DG17SYNBBS1760.26BBS1
1595lqh-m8_A_DG16_DG17SYNBBS1800.23BBS1
1605lqh-m9_A_DG16_DG17SYNBBS1830.24BBS1
1615lqh-m10_A_DG17_DT18BBBBB00780.29BB00
1625lqh-m1_A_DG17_DT18BBBBB00700.26BB00
1635lqh-m2_A_DG17_DT18BBBBB00690.27BB00
1645lqh-m3_A_DG17_DT18BBBBB00520.29BB00
1655lqh-m4_A_DG17_DT18BBBBB00670.25BB00
1665lqh-m5_A_DG17_DT18BBBBB00680.28BB00
1675lqh-m6_A_DG17_DT18BBBBB00630.26BB00
1685lqh-m7_A_DG17_DT18BBBBB00550.28BB00
1695lqh-m8_A_DG17_DT18BBBBB00760.25BB00
1705lqh-m9_A_DG17_DT18BBBBB00620.27BB00
1715lqh-m10_A_DT18_DT19miBBB12340.47BB12
1725lqh-m1_A_DT18_DT19miBBB12620.31BB12
1735lqh-m2_A_DT18_DT19miBBB12590.34BB12
1745lqh-m3_A_DT18_DT19BBBBB01370.41BB01
1755lqh-m4_A_DT18_DT19miBBB12710.31BB12
1765lqh-m5_A_DT18_DT19miBBB12600.34BB12
1775lqh-m6_A_DT18_DT19BBBBB00580.42BB00
1785lqh-m7_A_DT18_DT19BBBBB00590.42BB00
1795lqh-m8_A_DT18_DT19miBBB12540.37BB12
1805lqh-m9_A_DT18_DT19BBBBB00660.39BB00
1815lqh-m10_A_DT19_DA20NANNANT01.48BB20
1825lqh-m1_A_DT19_DA20NANNANT01.15BB07
1835lqh-m2_A_DT19_DA20NANNANT01.16BB16
1845lqh-m3_A_DT19_DA20NANNANT01.00BB07
1855lqh-m4_A_DT19_DA20NANNANT01.14BB16
1865lqh-m5_A_DT19_DA20NANNANT00.89BB00
1875lqh-m6_A_DT19_DA20NANNANT01.10BB07
1885lqh-m7_A_DT19_DA20NANNANT01.06BB07
1895lqh-m8_A_DT19_DA20NANNANT01.09BB16
1905lqh-m9_A_DT19_DA20NANNANT01.08BB07
1915lqh-m10_A_DA20_DG21ZZZZZ2S440.37ZZ2S
1925lqh-m1_A_DA20_DG21NANNANT00.59ZZ2S
1935lqh-m2_A_DA20_DG21NANNANT00.67ZZ2S
1945lqh-m3_A_DA20_DG21ZZZZZ2S110.50ZZ2S
1955lqh-m4_A_DA20_DG21NANNANT00.64ZZ2S
1965lqh-m5_A_DA20_DG21NANNANT00.55ZZ2S
1975lqh-m6_A_DA20_DG21NANNANT00.64ZZ2S
1985lqh-m7_A_DA20_DG21NANNANT00.58ZZ2S
1995lqh-m8_A_DA20_DG21NANNANT01.77AB2S
2005lqh-m9_A_DA20_DG21NANNANT01.71AB2S
2015lqh-m10_A_DG21_DG22SYNBBS1880.24BBS1
2025lqh-m1_A_DG21_DG22SYNBBS1770.30BBS1
2035lqh-m2_A_DG21_DG22SYNBBS1870.23BBS1
2045lqh-m3_A_DG21_DG22SYNBBS1950.17BBS1
2055lqh-m4_A_DG21_DG22SYNBBS1850.26BBS1
2065lqh-m5_A_DG21_DG22SYNBBS1830.24BBS1
2075lqh-m6_A_DG21_DG22SYNBBS1860.24BBS1
2085lqh-m7_A_DG21_DG22SYNBBS1910.20BBS1
2095lqh-m8_A_DG21_DG22SYNBBS1750.32BBS1
2105lqh-m9_A_DG21_DG22SYNBBS1630.39BBS1

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show



Color by conformation group (pyramids)

group
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Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N