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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Bat influenza A/H17N10 polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTD

Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
015m3h_R_U1_A2AAAAA00940.14AA00
025m3h_R_A2_U3AAAAA00560.17AA00
035m3h_R_U3_A4NANNANT00.28AA06
045m3h_R_A4_C5NANNANT00.52AA11
055m3h_R_C5_C6AAAAA08820.21AA08
065m3h_R_C6_U7AAAAA00840.17AA00
075m3h_R_U7_C8AAAAA00910.13AA00
085m3h_R_C8_U9AAAAA00910.20AA00
095m3h_R_U9_G10NANNANT00.52AB2S
105m3h_R_G10_C11NANNANT00.60OP21
115m3h_R_C11_U12A-BAB04830.25AB04
125m3h_V_A1_G2AAAAA08710.39AA08
135m3h_V_G2_U3AAAAA00460.28AA00
145m3h_V_U3_A4AAAAA08110.85AA08
155m3h_V_A4_G5SYNAB2S960.15AB2S
165m3h_V_G5_U6NANNANT01.25OPS1
175m3h_V_U6_A7NANNANT00.59ZZ02
185m3h_V_A7_A8B-ABA10440.44BA10
195m3h_V_A8_C9AAAAA00720.17AA00
205m3h_V_C9_A10AAAAA08540.41AA08
215m3h_V_A10_A11NANNANT01.72OP01
225m3h_V_A11_G12AAAAA00900.16AA00
235m3h_V_G12_A13AAAAA00910.14AA00
245m3h_V_A13_G14AAAAA00790.23AA00
255m3h_V_G14_G15AAAAA00840.21AA00
265m3h_V_G15_G16NANNANT01.47OP19

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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