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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Influenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTD

Results of the assignment of 25 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
015m3j_R_A2_U3AAAAA09850.20AA09
025m3j_R_U3_A4NANNANT00.32ZZ01
035m3j_R_A4_C5NANNANT00.61OP21
045m3j_R_C5_C6NANNANT00.90OP01
055m3j_R_C6_U7AAAAA08960.13AA08
065m3j_R_U7_C8AAAAA08930.21AA08
075m3j_R_C8_U9AAAAA00860.14AA00
085m3j_R_U9_G10SYNAB2S140.44AB2S
095m3j_R_G10_C11NANNANT00.55OP21
105m3j_R_C11_U12A-BAB04840.30AB04
115m3j_R_U12_U13NANNANT01.12BB07
125m3j_R_U13_C14NANNANT01.31IC04
135m3j_V_A1_G2AAAAA08140.67AA08
145m3j_V_G2_U3AAAAA08680.26AA08
155m3j_V_U3_A4NANNANT00.80AA08
165m3j_V_A4_G5SYNAB2S740.12AB2S
175m3j_V_G5_U6NANNANT01.43OPS1
185m3j_V_U6_A7NANNANT01.80IC05
195m3j_V_A7_A8B-ABA13690.33BA13
205m3j_V_A8_C9AAAAA08820.27AA08
215m3j_V_C9_A10AAAAA00420.39AA00
225m3j_V_A10_A11NANNANT01.44OP01
235m3j_V_A11_G12AAAAA00900.14AA00
245m3j_V_G12_A13AAAAA00690.14AA00
255m3j_V_A13_G14AAAAA00860.23AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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