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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Influenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTD

Results of the assignment of 25 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
015m3j_R_A2_U3AAAAA09790.20AA09
025m3j_R_U3_A4NANNANT00.32ZZ01
035m3j_R_A4_C5NANNANT00.63OP21
045m3j_R_C5_C6NANNANT01.01OP01
055m3j_R_C6_U7AAAAA08950.12AA08
065m3j_R_U7_C8AAAAA08920.21AA08
075m3j_R_C8_U9AAAAA00860.23AA00
085m3j_R_U9_G10SYNAB2S140.48AB2S
095m3j_R_G10_C11NANNANT00.58OP21
105m3j_R_C11_U12A-BAB04820.30AB04
115m3j_R_U12_U13OPNOP22320.35OP22
125m3j_R_U13_C14NANNANT01.31IC04
135m3j_V_A1_G2AAAAA08130.73AA08
145m3j_V_G2_U3AAAAA08660.24AA08
155m3j_V_U3_A4NANNANT00.84AA08
165m3j_V_A4_G5SYNAB2S750.23AB2S
175m3j_V_G5_U6NANNANT01.29OPS1
185m3j_V_U6_A7NANNANT00.57ZZ02
195m3j_V_A7_A8B-ABA13620.33BA13
205m3j_V_A8_C9AAAAA08810.23AA08
215m3j_V_C9_A10AAAAA00410.41AA00
225m3j_V_A10_A11NANNANT01.58OP01
235m3j_V_A11_G12AAAAA00900.13AA00
245m3j_V_G12_A13AAAAA00690.21AA00
255m3j_V_A13_G14AAAAA00860.17AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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